Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence

Por Chin, Chen-Shan, Chuang, Jeffrey H., Li, Hao
Publicado em 2005

Genome-wide identification of the regulatory targets of a transcription factor using biochemical characterization and computational genomic analysis

Por Jolly, Emmitt R, Chin, Chen-Shan, Herskowitz, Ira, Li, Hao
Publicado em 2005

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing

Por Sevim, Volkan, Bashir, Ali, Chin, Chen-Shan, Miga, Karen H.
Publicado no Bioinformatics (2016)

Scaffolding of long read assemblies using long range contact information

Por Ghurye, Jay, Pop, Mihai, Koren, Sergey, Bickhart, Derek, Chin, Chen-Shan
Publicado no BMC Genomics (2017)

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway

Por Samanta, Manoj Pratim, Tongprasit, Waraporn, Sethi, Himanshu, Chin, Chen-Shan, Stolc, Viktor
Publicado em 2006

Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways

Por Chin, Chen-Shan, Chubukov, Victor, Jolly, Emmitt R, DeRisi, Joe, Li, Hao
Publicado em 2008

A flexible and efficient template format for circular consensus sequencing and SNP detection

Por Travers, Kevin J., Chin, Chen-Shan, Rank, David R., Eid, John S., Turner, Stephen W.
Publicado em 2010

Gene expression patterns during adaptation of a helminth parasite to different environmental niches

Por Jolly, Emmitt R, Chin, Chen-Shan, Miller, Steve, Bahgat, Mahmoud M, Lim, KC, DeRisi, Joseph, McKerrow, James H
Publicado em 2007

De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads

Por Korlach, Jonas, Gedman, Gregory, Kingan, Sarah B., Chin, Chen-Shan, Howard, Jason T., Audet, Jean-Nicolas, Cantin, Lindsey, Jarvis, Erich D.
Publicado no Gigascience (2017)

Amplification-free long-read sequencing reveals unforeseen CRISPR-Cas9 off-target activity

Por Höijer, Ida, Johansson, Josefin, Gudmundsson, Sanna, Chin, Chen-Shan, Bunikis, Ignas, Häggqvist, Susana, Emmanouilidou, Anastasia, Wilbe, Maria, den Hoed, Marcel, Bondeson, Marie-Louise, Feuk, Lars, Gyllensten, Ulf, Ameur, Adam
Publicado no Genome Biol (2020)

HLA Typing for the Next Generation

Por Mayor, Neema P., Robinson, James, McWhinnie, Alasdair J. M., Ranade, Swati, Eng, Kevin, Midwinter, William, Bultitude, Will P., Chin, Chen-Shan, Bowman, Brett, Marks, Patrick, Braund, Henny, Madrigal, J. Alejandro, Latham, Katy, Marsh, Steven G. E.
Publicado no PLoS One (2015)

Extending reference assembly models

Por Church, Deanna M, Schneider, Valerie A, Steinberg, Karyn Meltz, Schatz, Michael C, Quinlan, Aaron R, Chin, Chen-Shan, Kitts, Paul A, Aken, Bronwen, Marth, Gabor T, Hoffman, Michael M, Herrero, Javier, Mendoza, M Lisandra Zepeda, Durbin, Richard, Flicek, Paul
Publicado no Genome Biol (2015)

Heterogeneous resistance to quizartinib in acute myeloid leukemia revealed by single-cell analysis

Por Smith, Catherine C., Paguirigan, Amy, Jeschke, Grace R., Lin, Kimberly C., Massi, Evan, Tarver, Theodore, Chin, Chen-Shan, Asthana, Saurabh, Olshen, Adam, Travers, Kevin J., Wang, Susana, Levis, Mark J., Perl, Alexander E., Radich, Jerald P., Shah, Neil P.
Publicado no Blood (2017)

Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia

Por Smith, Catherine C., Wang, Qi, Chin, Chen-Shan, Salerno, Sara, Damon, Lauren E., Levis, Mark J., Perl, Alexander E., Travers, Kevin J., Wang, Susana, Hunt, Jeremy P., Zarrinkar, Patrick P., Schadt, Eric E., Kasarskis, Andrew, Kuriyan, John, Shah, Neil P.
Publicado em 2012

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

Por Allard, Marc W., Muruvanda, Tim, Strain, Errol, Timme, Ruth, Luo, Yan, Wang, Charles, Keys, Christine E., Payne, Justin, Cooper, Tony, Luong, Khai, Song, Yi, Chin, Chen-Shan, Korlach, Jonas, Roberts, Rich J., Evans, Peter, Musser, Steven M., Brown, Eric W.
Publicado em 2013

Fully Assembled Genome Sequence for Salmonella enterica subsp. enterica Serovar Javiana CFSAN001992

Por Allard, Marc W., Muruvanda, Tim, Strain, Errol, Timme, Ruth, Luo, Yan, Wang, Charles, Keys, Christine E., Payne, Justin, Cooper, Tony, Luong, Khai, Song, Yi, Chin, Chen-Shan, Korlach, Jonas, Roberts, Richard J., Evans, Peter, Musser, Steven M., Brown, Eric W.
Publicado em 2014

Long-read, whole-genome shotgun sequence data for five model organisms

Por Kim, Kristi E, Peluso, Paul, Babayan, Primo, Yeadon, P. Jane, Yu, Charles, Fisher, William W, Chin, Chen-Shan, Rapicavoli, Nicole A, Rank, David R, Li, Joachim, Catcheside, David E. A, Celniker, Susan E, Phillippy, Adam M, Bergman, Casey M, Landolin, Jane M
Publicado no Sci Data (2014)

Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

Por Chin, Chen-Shan, Peluso, Paul, Sedlazeck, Fritz J., Nattestad, Maria, Concepcion, Gregory T., Clum, Alicia, Dunn, Christopher, O’Malley, Ronan, Figueroa-Balderas, Rosa, Morales-Cruz, Abraham, Cramer, Grant R., Delledonne, Massimo, Luo, Chongyuan, Ecker, Joseph R., Cantu, Dario, Rank, David R., Schatz, Michael C.
Publicado no Nat Methods (2016)

The Origin of the Haitian Cholera Outbreak Strain

Por Chin, Chen-Shan, Sorenson, Jon, Harris, Jason B., Robins, William P., Charles, Richelle C., Jean-Charles, Roger R., Bullard, James, Webster, Dale R., Kasarskis, Andrew, Peluso, Paul, Paxinos, Ellen E., Yamaichi, Yoshiharu, Calderwood, Stephen B., Mekalanos, John J., Schadt, Eric E., Waldor, Matthew K.
Publicado em 2010

Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus

Por Nguyen, Thong T., Suryamohan, Kushal, Kuriakose, Boney, Janakiraman, Vasantharajan, Reichelt, Mike, Chaudhuri, Subhra, Guillory, Joseph, Divakaran, Neethu, Rabins, P. E., Goel, Ridhi, Deka, Bhabesh, Sarkar, Suman, Ekka, Preety, Tsai, Yu-Chih, Vargas, Derek, Santhosh, Sam, Mohan, Sangeetha, Chin, Chen-Shan, Korlach, Jonas, Thomas, George, Babu, Azariah, Seshagiri, Somasekar
Publicado no Sci Rep (2018)