Efficient Sampling of Parsimonious Inversion Histories with Application to Genome Rearrangement in Yersinia

Por Miklós, István, Darling, Aaron E.
Publicado em 2009

Local and relaxed clocks: the best of both worlds

Por Fourment, Mathieu, Darling, Aaron E.
Publicado no PeerJ (2018)

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics

Por Fourment, Mathieu, Darling, Aaron E.
Publicado no PeerJ (2019)

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq

Por Burke, Catherine M., Darling, Aaron E.
Publicado no PeerJ (2016)

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Por Darling, Aaron E., Mau, Bob, Perna, Nicole T.
Publicado em 2010

The rise and fall of breakpoint reuse depending on genome resolution

Por Attie, Oliver, Darling, Aaron E, Yancopoulos, Sophia
Publicado em 2011

Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)

Por DeMaere, Matthew Z., Darling, Aaron E.
Publicado no PeerJ (2016)

Sim3C: simulation of Hi-C and Meta3C proximity ligation sequencing technologies

Por DeMaere, Matthew Z, Darling, Aaron E
Publicado no Gigascience (2017)

bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes

Por DeMaere, Matthew Z., Darling, Aaron E.
Publicado no Genome Biol (2019)

Dynamics of Genome Rearrangement in Bacterial Populations

Por Darling, Aaron E., Miklós, István, Ragan, Mark A.
Publicado em 2008

The impact of migratory flyways on the spread of avian influenza virus in North America

Por Fourment, Mathieu, Darling, Aaron E., Holmes, Edward C.
Publicado no BMC Evol Biol (2017)

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

Por Didelot Xavier, Méric Guillaume, Falush Daniel, Darling Aaron E
Publicado em 2012-06-01

Seevolution: visualizing chromosome evolution

Por Esteban-Marcos, Andrés, Darling, Aaron E., Ragan, Mark A.
Publicado em 2009

Metagenomic Sequencing of an In Vitro-Simulated Microbial Community

Por Morgan, Jenna L., Darling, Aaron E., Eisen, Jonathan A.
Publicado em 2010

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

Por Didelot, Xavier, Méric, Guillaume, Falush, Daniel, Darling, Aaron E
Publicado em 2012

Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices

Por Lang, Jenna Morgan, Darling, Aaron E., Eisen, Jonathan A.
Publicado em 2013

Online Bayesian Phylogenetic Inference: Theoretical Foundations via Sequential Monte Carlo

Por Dinh, Vu, Darling, Aaron E, Matsen IV, Frederick A
Publicado no Syst Biol (2018)

Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli

Por Mau, Bob, Glasner, Jeremy D, Darling, Aaron E, Perna, Nicole T
Publicado em 2006

Mauve Assembly Metrics

Por Darling, Aaron E., Tritt, Andrew, Eisen, Jonathan A., Facciotti, Marc T.
Publicado em 2011

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Por Tritt, Andrew, Eisen, Jonathan A., Facciotti, Marc T., Darling, Aaron E.
Publicado em 2012