Databases and Bioinformatics Tools for the Study of DNA Repair

Por Milanowska, Kaja, Rother, Kristian, Bujnicki, Janusz M.
Publicado em 2011

From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal

Por Smit, Sandra, Rother, Kristian, Heringa, Jaap, Knight, Rob
Publicado em 2008

ModeRNA: a tool for comparative modeling of RNA 3D structure

Por Rother, Magdalena, Rother, Kristian, Puton, Tomasz, Bujnicki, Janusz M.
Publicado em 2011

SuperHapten: a comprehensive database for small immunogenic compounds

Por Günther, Stefan, Hempel, Dorothea, Dunkel, Mathias, Rother, Kristian, Preissner, Robert
Publicado em 2007

RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures

Por Pietal Michal J, Szostak Natalia, Rother Kristian M, Bujnicki Janusz M
Publicado em 2012-12-01

Molecular Packing and Packing Defects in Helical Membrane Proteins

Por Hildebrand, Peter Werner, Rother, Kristian, Goede, Andrean, Preissner, Robert, Frömmel, Cornelius
Publicado em 2005

Voronoia: analyzing packing in protein structures

Por Rother, Kristian, Hildebrand, Peter Werner, Goede, Andrean, Gruening, Bjoern, Preissner, Robert
Publicado em 2009

RNA and protein 3D structure modeling: similarities and differences

Por Rother, Kristian, Rother, Magdalena, Boniecki, Michał, Puton, Tomasz, Bujnicki, Janusz M.
Publicado em 2011

RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures

Por Pietal, Michal J, Szostak, Natalia, Rother, Kristian M, Bujnicki, Janusz M
Publicado em 2012

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction

Por Puton, Tomasz, Kozlowski, Lukasz P., Rother, Kristian M., Bujnicki, Janusz M.
Publicado em 2013

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction

Por Puton, Tomasz, Kozlowski, Lukasz P., Rother, Kristian M., Bujnicki, Janusz M.
Publicado em 2014

IGERS: Inferring Gibbs Energy Changes of Biochemical Reactions from Reaction Similarities

Por Rother, Kristian, Hoffmann, Sabrina, Bulik, Sascha, Hoppe, Andreas, Gasteiger, Johann, Holzhütter, Herrmann-Georg
Publicado em 2010

MetalionRNA: computational predictor of metal-binding sites in RNA structures

Por Philips, Anna, Milanowska, Kaja, Lach, Grzegorz, Boniecki, Michal, Rother, Kristian, Bujnicki, Janusz M.
Publicado em 2012

A toolbox for developing bioinformatics software

Por Rother, Kristian, Potrzebowski, Wojciech, Puton, Tomasz, Rother, Magdalena, Wywial, Ewa, Bujnicki, Janusz M.
Publicado em 2012

A structural keystone for drug design

Por Rother Kristian, Dunkel Mathias, Michalsky Elke, Trissl Silke, Goede Andrean, Leser Ulf, Preissner Robert
Publicado em 2006-06-01

Voronoia4RNA—a database of atomic packing densities of RNA structures and their complexes

Por Ismer, Jochen, Rose, Alexander S., Tiemann, Johanna K. S., Goede, Andrean, Rother, Kristian, Hildebrand, Peter W.
Publicado em 2013

Columba: an integrated database of proteins, structures, and annotations

Por Trißl, Silke, Rother, Kristian, Müller, Heiko, Steinke, Thomas, Koch, Ina, Preissner, Robert, Frömmel, Cornelius, Leser, Ulf
Publicado em 2005

REPAIRtoire—a database of DNA repair pathways

Por Milanowska, Kaja, Krwawicz, Joanna, Papaj, Grzegorz, Kosiński, Jan, Poleszak, Katarzyna, Lesiak, Justyna, Osińska, Ewelina, Rother, Kristian, Bujnicki, Janusz M.
Publicado em 2011

MODOMICS: a database of RNA modification pathways. 2008 update

Por Czerwoniec, Anna, Dunin-Horkawicz, Stanislaw, Purta, Elzbieta, Kaminska, Katarzyna H., Kasprzak, Joanna M., Bujnicki, Janusz M., Grosjean, Henri, Rother, Kristian
Publicado em 2009

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

Por Boniecki, Michal J., Lach, Grzegorz, Dawson, Wayne K., Tomala, Konrad, Lukasz, Pawel, Soltysinski, Tomasz, Rother, Kristian M., Bujnicki, Janusz M.
Publicado no Nucleic Acids Res (2016)