PPI layouts: BioJS components for the display of Protein-Protein Interactions

por Salazar, Gustavo A., Meintjes, Ayton, Mulder, Nicola
Publicado 2014

DAS Writeback: A Collaborative Annotation System

por Salazar, Gustavo A, Jimenez, Rafael C, Garcia, Alexander, Hermjakob, Henning, Mulder, Nicola, Blake, Edwin
Publicado 2011

myKaryoView: A Light-Weight Client for Visualization of Genomic Data

por Jimenez, Rafael C., Salazar, Gustavo A., Gel, Bernat, Dopazo, Joaquin, Mulder, Nicola, Corpas, Manuel
Publicado 2011

A web-based protein interaction network visualizer

por Salazar, Gustavo A, Meintjes, Ayton, Mazandu, Gaston K, Rapanoël, Holifidy A, Akinola, Richard O, Mulder, Nicola J
Publicado 2014

Dasty3, a WEB framework for DAS

por Villaveces, Jose M., Jimenez, Rafael C., Garcia, Leyla J., Salazar, Gustavo A., Gel, Bernat, Mulder, Nicola, Martin, Maria, Garcia, Alexander, Hermjakob, Henning
Publicado 2011

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes

por Richardson, Lorna J, Rawlings, Neil D, Salazar, Gustavo A, Almeida, Alexandre, Haft, David R, Ducq, Gregory, Sutton, Granger G, Finn, Robert D
Publicado en Nucleic Acids Res (2019)

MyDas, an Extensible Java DAS Server

por Salazar, Gustavo A., García, Leyla J., Jones, Philip, Jimenez, Rafael C., Quinn, Antony F., Jenkinson, Andrew M., Mulder, Nicola, Martin, Maria, Hunter, Sarah, Hermjakob, Henning
Publicado 2012

Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue

por Trugilho, Monique Ramos de Oliveira, Hottz, Eugenio Damaceno, Brunoro, Giselle Villa Flor, Teixeira-Ferreira, André, Carvalho, Paulo Costa, Salazar, Gustavo Adolfo, Zimmerman, Guy A., Bozza, Fernando A., Bozza, Patrícia T., Perales, Jonas
Publicado en PLoS Pathog (2017)

Pfam: The protein families database in 2021

por Mistry, Jaina, Chuguransky, Sara, Williams, Lowri, Qureshi, Matloob, Salazar, Gustavo A, Sonnhammer, Erik L L, Tosatto, Silvio C E, Paladin, Lisanna, Raj, Shriya, Richardson, Lorna J, Finn, Robert D, Bateman, Alex
Publicado en Nucleic Acids Res (2020)

The Pfam protein families database: towards a more sustainable future

por Finn, Robert D., Coggill, Penelope, Eberhardt, Ruth Y., Eddy, Sean R., Mistry, Jaina, Mitchell, Alex L., Potter, Simon C., Punta, Marco, Qureshi, Matloob, Sangrador-Vegas, Amaia, Salazar, Gustavo A., Tate, John, Bateman, Alex
Publicado en Nucleic Acids Res (2016)

BioJS: an open source JavaScript framework for biological data visualization

por Gómez, John, García, Leyla J., Salazar, Gustavo A., Villaveces, Jose, Gore, Swanand, García, Alexander, Martín, Maria J., Launay, Guillaume, Alcántara, Rafael, del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Velankar, Sameer, Hermjakob, Henning, Zong, Chenggong, Ping, Peipei, Corpas, Manuel, Jiménez, Rafael C.
Publicado 2013

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

por Mitchell, Alex L, Scheremetjew, Maxim, Denise, Hubert, Potter, Simon, Tarkowska, Aleksandra, Qureshi, Matloob, Salazar, Gustavo A, Pesseat, Sebastien, Boland, Miguel A, Hunter, Fiona M I, ten Hoopen, Petra, Alako, Blaise, Amid, Clara, Wilkinson, Darren J, Curtis, Thomas P, Cochrane, Guy, Finn, Robert D
Publicado en Nucleic Acids Res (2018)

The Pfam protein families database in 2019

por El-Gebali, Sara, Mistry, Jaina, Bateman, Alex, Eddy, Sean R, Luciani, Aurélien, Potter, Simon C, Qureshi, Matloob, Richardson, Lorna J, Salazar, Gustavo A, Smart, Alfredo, Sonnhammer, Erik L L, Hirsh, Layla, Paladin, Lisanna, Piovesan, Damiano, Tosatto, Silvio C E, Finn, Robert D
Publicado en Nucleic Acids Res (2019)

BioJS: an open source standard for biological visualisation – its status in 2014

por Corpas, Manuel, Jimenez, Rafael, Carbon, Seth J, García, Alex, Garcia, Leyla, Goldberg, Tatyana, Gomez, John, Kalderimis, Alexis, Lewis, Suzanna E, Mulvany, Ian, Pawlik, Aleksandra, Rowland, Francis, Salazar, Gustavo, Schreiber, Fabian, Sillitoe, Ian, Spooner, William H, Thanki, Anil S., Villaveces, José M, Yachdav, Guy, Hermjakob, Henning
Publicado 2014

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

por Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L, Buchan, Daniel W A, Finn, Robert D, Gough, Julian, Jones, David, Kelley, Lawrence A, Paysan-Lafosse, Typhaine, Lam, Su Datt, Murzin, Alexey G, Pandurangan, Arun Prasad, Salazar, Gustavo A, Skwark, Marcin J, Sternberg, Michael J E, Velankar, Sameer, Orengo, Christine
Publicado en Nucleic Acids Res (2020)

The InterPro protein families and domains database: 20 years on

por Blum, Matthias, Chang, Hsin-Yu, Chuguransky, Sara, Grego, Tiago, Kandasaamy, Swaathi, Mitchell, Alex, Nuka, Gift, Paysan-Lafosse, Typhaine, Qureshi, Matloob, Raj, Shriya, Richardson, Lorna, Salazar, Gustavo A, Williams, Lowri, Bork, Peer, Bridge, Alan, Gough, Julian, Haft, Daniel H, Letunic, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex, Finn, Robert D
Publicado en Nucleic Acids Res (2020)

iAnn: an event sharing platform for the life sciences

por Jimenez, Rafael C., Albar, Juan P., Bhak, Jong, Blatter, Marie-Claude, Blicher, Thomas, Brazas, Michelle D., Brooksbank, Cath, Budd, Aidan, De Las Rivas, Javier, Dreyer, Jacqueline, van Driel, Marc A., Dunn, Michael J., Fernandes, Pedro L., van Gelder, Celia W. G., Hermjakob, Henning, Ioannidis, Vassilios, Judge, David P., Kahlem, Pascal, Korpelainen, Eija, Kraus, Hans-Joachim, Loveland, Jane, Mayer, Christine, McDowall, Jennifer, Moran, Federico, Mulder, Nicola, Nyronen, Tommi, Rother, Kristian, Salazar, Gustavo A., Schneider, Reinhard, Via, Allegra, Villaveces, Jose M., Yu, Ping, Schneider, Maria V., Attwood, Teresa K., Corpas, Manuel
Publicado 2013

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

por Mitchell, Alex L, Attwood, Teresa K, Babbitt, Patricia C, Blum, Matthias, Bork, Peer, Bridge, Alan, Brown, Shoshana D, Chang, Hsin-Yu, El-Gebali, Sara, Fraser, Matthew I, Gough, Julian, Haft, David R, Huang, Hongzhan, Letunic, Ivica, Lopez, Rodrigo, Luciani, Aurélien, Madeira, Fabio, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Nuka, Gift, Orengo, Christine, Pandurangan, Arun P, Paysan-Lafosse, Typhaine, Pesseat, Sebastien, Potter, Simon C, Qureshi, Matloob A, Rawlings, Neil D, Redaschi, Nicole, Richardson, Lorna J, Rivoire, Catherine, Salazar, Gustavo A, Sangrador-Vegas, Amaia, Sigrist, Christian J A, Sillitoe, Ian, Sutton, Granger G, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Yong, Siew-Yit, Finn, Robert D
Publicado en Nucleic Acids Res (2019)