PPI layouts: BioJS components for the display of Protein-Protein Interactions

gan Salazar, Gustavo A., Meintjes, Ayton, Mulder, Nicola
Cyhoeddwyd 2014

DAS Writeback: A Collaborative Annotation System

gan Salazar, Gustavo A, Jimenez, Rafael C, Garcia, Alexander, Hermjakob, Henning, Mulder, Nicola, Blake, Edwin
Cyhoeddwyd 2011

myKaryoView: A Light-Weight Client for Visualization of Genomic Data

gan Jimenez, Rafael C., Salazar, Gustavo A., Gel, Bernat, Dopazo, Joaquin, Mulder, Nicola, Corpas, Manuel
Cyhoeddwyd 2011

A web-based protein interaction network visualizer

gan Salazar, Gustavo A, Meintjes, Ayton, Mazandu, Gaston K, Rapanoël, Holifidy A, Akinola, Richard O, Mulder, Nicola J
Cyhoeddwyd 2014

Dasty3, a WEB framework for DAS

gan Villaveces, Jose M., Jimenez, Rafael C., Garcia, Leyla J., Salazar, Gustavo A., Gel, Bernat, Mulder, Nicola, Martin, Maria, Garcia, Alexander, Hermjakob, Henning
Cyhoeddwyd 2011

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes

gan Richardson, Lorna J, Rawlings, Neil D, Salazar, Gustavo A, Almeida, Alexandre, Haft, David R, Ducq, Gregory, Sutton, Granger G, Finn, Robert D
Cyhoeddwyd yn Nucleic Acids Res (2019)

MyDas, an Extensible Java DAS Server

gan Salazar, Gustavo A., García, Leyla J., Jones, Philip, Jimenez, Rafael C., Quinn, Antony F., Jenkinson, Andrew M., Mulder, Nicola, Martin, Maria, Hunter, Sarah, Hermjakob, Henning
Cyhoeddwyd 2012

Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue

gan Trugilho, Monique Ramos de Oliveira, Hottz, Eugenio Damaceno, Brunoro, Giselle Villa Flor, Teixeira-Ferreira, André, Carvalho, Paulo Costa, Salazar, Gustavo Adolfo, Zimmerman, Guy A., Bozza, Fernando A., Bozza, Patrícia T., Perales, Jonas
Cyhoeddwyd yn PLoS Pathog (2017)

Pfam: The protein families database in 2021

gan Mistry, Jaina, Chuguransky, Sara, Williams, Lowri, Qureshi, Matloob, Salazar, Gustavo A, Sonnhammer, Erik L L, Tosatto, Silvio C E, Paladin, Lisanna, Raj, Shriya, Richardson, Lorna J, Finn, Robert D, Bateman, Alex
Cyhoeddwyd yn Nucleic Acids Res (2020)

The Pfam protein families database: towards a more sustainable future

gan Finn, Robert D., Coggill, Penelope, Eberhardt, Ruth Y., Eddy, Sean R., Mistry, Jaina, Mitchell, Alex L., Potter, Simon C., Punta, Marco, Qureshi, Matloob, Sangrador-Vegas, Amaia, Salazar, Gustavo A., Tate, John, Bateman, Alex
Cyhoeddwyd yn Nucleic Acids Res (2016)

BioJS: an open source JavaScript framework for biological data visualization

gan Gómez, John, García, Leyla J., Salazar, Gustavo A., Villaveces, Jose, Gore, Swanand, García, Alexander, Martín, Maria J., Launay, Guillaume, Alcántara, Rafael, del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Velankar, Sameer, Hermjakob, Henning, Zong, Chenggong, Ping, Peipei, Corpas, Manuel, Jiménez, Rafael C.
Cyhoeddwyd 2013

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

gan Mitchell, Alex L, Scheremetjew, Maxim, Denise, Hubert, Potter, Simon, Tarkowska, Aleksandra, Qureshi, Matloob, Salazar, Gustavo A, Pesseat, Sebastien, Boland, Miguel A, Hunter, Fiona M I, ten Hoopen, Petra, Alako, Blaise, Amid, Clara, Wilkinson, Darren J, Curtis, Thomas P, Cochrane, Guy, Finn, Robert D
Cyhoeddwyd yn Nucleic Acids Res (2018)

The Pfam protein families database in 2019

gan El-Gebali, Sara, Mistry, Jaina, Bateman, Alex, Eddy, Sean R, Luciani, Aurélien, Potter, Simon C, Qureshi, Matloob, Richardson, Lorna J, Salazar, Gustavo A, Smart, Alfredo, Sonnhammer, Erik L L, Hirsh, Layla, Paladin, Lisanna, Piovesan, Damiano, Tosatto, Silvio C E, Finn, Robert D
Cyhoeddwyd yn Nucleic Acids Res (2019)

BioJS: an open source standard for biological visualisation – its status in 2014

gan Corpas, Manuel, Jimenez, Rafael, Carbon, Seth J, García, Alex, Garcia, Leyla, Goldberg, Tatyana, Gomez, John, Kalderimis, Alexis, Lewis, Suzanna E, Mulvany, Ian, Pawlik, Aleksandra, Rowland, Francis, Salazar, Gustavo, Schreiber, Fabian, Sillitoe, Ian, Spooner, William H, Thanki, Anil S., Villaveces, José M, Yachdav, Guy, Hermjakob, Henning
Cyhoeddwyd 2014

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

gan Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L, Buchan, Daniel W A, Finn, Robert D, Gough, Julian, Jones, David, Kelley, Lawrence A, Paysan-Lafosse, Typhaine, Lam, Su Datt, Murzin, Alexey G, Pandurangan, Arun Prasad, Salazar, Gustavo A, Skwark, Marcin J, Sternberg, Michael J E, Velankar, Sameer, Orengo, Christine
Cyhoeddwyd yn Nucleic Acids Res (2020)

The InterPro protein families and domains database: 20 years on

gan Blum, Matthias, Chang, Hsin-Yu, Chuguransky, Sara, Grego, Tiago, Kandasaamy, Swaathi, Mitchell, Alex, Nuka, Gift, Paysan-Lafosse, Typhaine, Qureshi, Matloob, Raj, Shriya, Richardson, Lorna, Salazar, Gustavo A, Williams, Lowri, Bork, Peer, Bridge, Alan, Gough, Julian, Haft, Daniel H, Letunic, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex, Finn, Robert D
Cyhoeddwyd yn Nucleic Acids Res (2020)

iAnn: an event sharing platform for the life sciences

gan Jimenez, Rafael C., Albar, Juan P., Bhak, Jong, Blatter, Marie-Claude, Blicher, Thomas, Brazas, Michelle D., Brooksbank, Cath, Budd, Aidan, De Las Rivas, Javier, Dreyer, Jacqueline, van Driel, Marc A., Dunn, Michael J., Fernandes, Pedro L., van Gelder, Celia W. G., Hermjakob, Henning, Ioannidis, Vassilios, Judge, David P., Kahlem, Pascal, Korpelainen, Eija, Kraus, Hans-Joachim, Loveland, Jane, Mayer, Christine, McDowall, Jennifer, Moran, Federico, Mulder, Nicola, Nyronen, Tommi, Rother, Kristian, Salazar, Gustavo A., Schneider, Reinhard, Via, Allegra, Villaveces, Jose M., Yu, Ping, Schneider, Maria V., Attwood, Teresa K., Corpas, Manuel
Cyhoeddwyd 2013

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

gan Mitchell, Alex L, Attwood, Teresa K, Babbitt, Patricia C, Blum, Matthias, Bork, Peer, Bridge, Alan, Brown, Shoshana D, Chang, Hsin-Yu, El-Gebali, Sara, Fraser, Matthew I, Gough, Julian, Haft, David R, Huang, Hongzhan, Letunic, Ivica, Lopez, Rodrigo, Luciani, Aurélien, Madeira, Fabio, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Nuka, Gift, Orengo, Christine, Pandurangan, Arun P, Paysan-Lafosse, Typhaine, Pesseat, Sebastien, Potter, Simon C, Qureshi, Matloob A, Rawlings, Neil D, Redaschi, Nicole, Richardson, Lorna J, Rivoire, Catherine, Salazar, Gustavo A, Sangrador-Vegas, Amaia, Sigrist, Christian J A, Sillitoe, Ian, Sutton, Granger G, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Yong, Siew-Yit, Finn, Robert D
Cyhoeddwyd yn Nucleic Acids Res (2019)