Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations

por Li, Lewyn, Shakhnovich, Eugene I.
Publicado 2001

Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases

por Li, Lewyn, Shakhnovich, Eugene I., Mirny, Leonid A.
Publicado 2003

Identification of the NS5B S282T Resistant Variant and Two Novel Amino Acid Substitutions That Affect Replication Capacity in Hepatitis C Virus-Infected Patients Treated with Meric...

por Tong, Xiao, Li, Lewyn, Haines, Kristin, Najera, Isabel
Publicado 2014

Stepwise Unfolding of Ankyrin Repeats in a Single Protein Revealed by Atomic Force Microscopy

por Li, Lewyn, Wetzel, Svava, Plückthun, Andreas, Fernandez, Julio M.
Publicado 2006

Fingerprinting DHFR in Single-Molecule AFM Studies

por Ainavarapu, Sri Rama Koti, Li, Lewyn, Fernandez, Julio M.
Publicado 2006

Topological determinants of protein folding

por Dokholyan, Nikolay V., Li, Lewyn, Ding, Feng, Shakhnovich, Eugene I.
Publicado 2002

Ligand Binding Modulates the Mechanical Stability of Dihydrofolate Reductase

por Ainavarapu, Sri Rama Koti, Li, Lewyn, Badilla, Carmen L., Fernandez, Julio M.
Publicado 2005

Similar Prevalence of Low-Abundance Drug-Resistant Variants in Treatment-Naive Patients with Genotype 1a and 1b Hepatitis C Virus Infections as Determined by Ultradeep Pyrosequenci...

por Margeridon-Thermet, Severine, Le Pogam, Sophie, Li, Lewyn, Liu, Tommy F., Shulman, Nancy, Shafer, Robert W., Najera, Isabel
Publicado 2014

Contour Length and Refolding Rate of a Small Protein Controlled by Engineered Disulfide Bonds

por Ainavarapu, Sri Rama Koti, Brujić, Jasna, Huang, Hector H., Wiita, Arun P., Lu, Hui, Li, Lewyn, Walther, Kirstin A., Carrion-Vazquez, Mariano, Li, Hongbin, Fernandez, Julio M.
Publicado 2007

Estrogen receptor signaling is reprogrammed during breast tumorigenesis

por Chi, David, Singhal, Hari, Li, Lewyn, Xiao, Tengfei, Liu, Weihan, Pun, Matthew, Jeselsohn, Rinath, He, Housheng, Lim, Elgene, Vadhi, Raga, Rao, Prakash, Long, Henry, Garber, Judy, Brown, Myles
Publicado en Proc Natl Acad Sci U S A (2019)

Transcriptome Profiling of the Intoxication Response of Tenebrio molitor Larvae to Bacillus thuringiensis Cry3Aa Protoxin

por Oppert, Brenda, Dowd, Scot E., Bouffard, Pascal, Li, Lewyn, Conesa, Ana, Lorenzen, Marcé D., Toutges, Michelle, Marshall, Jeremy, Huestis, Diana L., Fabrick, Jeff, Oppert, Cris, Jurat-Fuentes, Juan Luis
Publicado 2012

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

por Qin, Qian, Mei, Shenglin, Wu, Qiu, Sun, Hanfei, Li, Lewyn, Taing, Len, Chen, Sujun, Li, Fugen, Liu, Tao, Zang, Chongzhi, Xu, Han, Chen, Yiwen, Meyer, Clifford A., Zhang, Yong, Brown, Myles, Long, Henry W., Liu, X. Shirley
Publicado en BMC Bioinformatics (2016)

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

por Morin, Phillip A., Archer, Frederick I., Foote, Andrew D., Vilstrup, Julia, Allen, Eric E., Wade, Paul, Durban, John, Parsons, Kim, Pitman, Robert, Li, Lewyn, Bouffard, Pascal, Abel Nielsen, Sandra C., Rasmussen, Morten, Willerslev, Eske, Gilbert, M. Thomas P., Harkins, Timothy
Publicado 2010

Super-Enhancer-Associated LncRNA UCA1 Interacts Directly with AMOT to Activate YAP Target Genes in Epithelial Ovarian Cancer

por Lin, Xianzhi, Spindler, Tassja J., de Souza Fonseca, Marcos Abraão, Corona, Rosario I., Seo, Ji-Heui, Dezem, Felipe Segato, Li, Lewyn, Lee, Janet M., Long, Henry W., Sellers, Thomas A., Karlan, Beth Y., Noushmehr, Houtan, Freedman, Matthew L., Gayther, Simon A., Lawrenson, Kate
Publicado en iScience (2019)

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)

por Kukekova, Anna V, Johnson, Jennifer L, Teiling, Clotilde, Li, Lewyn, Oskina, Irina N, Kharlamova, Anastasiya V, Gulevich, Rimma G, Padte, Ravee, Dubreuil, Michael M, Vladimirova, Anastasiya V, Shepeleva, Darya V, Shikhevich, Svetlana G, Sun, Qi, Ponnala, Lalit, Temnykh, Svetlana V, Trut, Lyudmila N, Acland, Gregory M
Publicado 2011

An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity

por Suen, Garret, Scott, Jarrod J., Aylward, Frank O., Adams, Sandra M., Tringe, Susannah G., Pinto-Tomás, Adrián A., Foster, Clifton E., Pauly, Markus, Weimer, Paul J., Barry, Kerrie W., Goodwin, Lynne A., Bouffard, Pascal, Li, Lewyn, Osterberger, Jolene, Harkins, Timothy T., Slater, Steven C., Donohue, Timothy J., Currie, Cameron R.
Publicado 2010

Oncogenic deregulation of EZH2 as an opportunity for targeted therapy in lung cancer

por Zhang, Haikuo, Qi, Jun, Reyes, Jaime M., Li, Lewyn, Rao, Prakash K., Li, Fugen, Lin, Charles Y., Perry, Jennifer A., Lawlor, Matthew A., Federation, Alexander, De Raedt, Thomas, Li, Yvonne Y., Liu, Yan, Duarte, Melissa A., Zhang, Yanxi, Herter-Sprie, Grit S., Kikuchi, Eiki, Carretero, Julian, Perou, Charles M., Reibel, Jacob B., Paulk, Joshiawa, Bronson, Roderick T., Watanabe, Hideo, Fillmore, Christine M., Kim, Carla F., Hammerman, Peter S., Brown, Myles, Cichowski, Karen, Long, Henry, Bradner, James E., Wong, Kwok-Kin
Publicado en Cancer Discov (2016)

ARv7 Represses Tumor-Suppressor Genes in Castration-Resistant Prostate Cancer

por Cato, Laura, de Tribolet-Hardy, Jonas, Lee, Irene, Rottenberg, Jaice T., Coleman, Ilsa, Melchers, Diana, Houtman, Rene, Xiao, Tengfei, Li, Wei, Uo, Takuma, Sun, Shihua, Kuznik, Nane C., Gö ppert, Bettina, Ozgun, Fatma, van Royen, Martin E., Houtsmuller, Adriaan B., Vadhi, Raga, Rao, Prakash K., Li, Lewyn, Balk, Steven P., Den, Robert B., Trock, Bruce J., Karnes, R. Jeffrey, Jenkins, Robert B., Klein, Eric A., Davicioni, Elai, Gruhl, Friederike J., Long, Henry W., Liu, X. Shirley, Cato, Andrew C.B., Lack, Nathan A., Nelson, Peter S., Plymate, Stephen R., Groner, Anna C., Brown, Myles
Publicado en Cancer Cell (2019)

The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle

por Suen, Garret, Teiling, Clotilde, Li, Lewyn, Holt, Carson, Abouheif, Ehab, Bornberg-Bauer, Erich, Bouffard, Pascal, Caldera, Eric J., Cash, Elizabeth, Cavanaugh, Amy, Denas, Olgert, Elhaik, Eran, Favé, Marie-Julie, Gadau, Jürgen, Gibson, Joshua D., Graur, Dan, Grubbs, Kirk J., Hagen, Darren E., Harkins, Timothy T., Helmkampf, Martin, Hu, Hao, Johnson, Brian R., Kim, Jay, Marsh, Sarah E., Moeller, Joseph A., Muñoz-Torres, Mónica C., Murphy, Marguerite C., Naughton, Meredith C., Nigam, Surabhi, Overson, Rick, Rajakumar, Rajendhran, Reese, Justin T., Scott, Jarrod J., Smith, Chris R., Tao, Shu, Tsutsui, Neil D., Viljakainen, Lumi, Wissler, Lothar, Yandell, Mark D., Zimmer, Fabian, Taylor, James, Slater, Steven C., Clifton, Sandra W., Warren, Wesley C., Elsik, Christine G., Smith, Christopher D., Weinstock, George M., Gerardo, Nicole M., Currie, Cameron R.
Publicado 2011