Experimental evidence for the role of domain swapping in the evolution of the histone fold

由 Hadjithomas, Michalis, Moudrianakis, Evangelos N.
出版 2011

Structural Characterization of the Rous Sarcoma Virus RNA Stability Element

由 Weil, Jason E., Hadjithomas, Michalis, Beemon, Karen L.
出版 2009

Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila

由 Cervantes, Marcella D., Hamilton, Eileen P., Xiong, Jie, Lawson, Michael J., Yuan, Dongxia, Hadjithomas, Michalis, Miao, Wei, Orias, Eduardo
出版 2013

Correction: Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila

由 Cervantes, Marcella D., Hamilton, Eileen P., Xiong, Jie, Lawson, Michael J., Yuan, Dongxia, Hadjithomas, Michalis, Miao, Wei, Orias, Eduardo
發表在 PLoS Biol (2015)

Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides

由 Kloosterman, Alexander M., Cimermancic, Peter, Elsayed, Somayah S., Du, Chao, Hadjithomas, Michalis, Donia, Mohamed S., Fischbach, Michael A., van Wezel, Gilles P., Medema, Marnix H.
發表在 PLoS Biol (2020)

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

由 Hadjithomas, Michalis, Chen, I-Min A., Chu, Ken, Huang, Jinghua, Ratner, Anna, Palaniappan, Krishna, Andersen, Evan, Markowitz, Victor, Kyrpides, Nikos C., Ivanova, Natalia N.
發表在 Nucleic Acids Res (2017)

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

由 Chen, I-Min A., Markowitz, Victor M., Palaniappan, Krishna, Szeto, Ernest, Chu, Ken, Huang, Jinghua, Ratner, Anna, Pillay, Manoj, Hadjithomas, Michalis, Huntemann, Marcel, Mikhailova, Natalia, Ovchinnikova, Galina, Ivanova, Natalia N., Kyrpides, Nikos C.
發表在 BMC Genomics (2016)

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

由 Hadjithomas, Michalis, Chen, I-Min Amy, Chu, Ken, Ratner, Anna, Palaniappan, Krishna, Szeto, Ernest, Huang, Jinghua, Reddy, T. B. K., Cimermančič, Peter, Fischbach, Michael A., Ivanova, Natalia N., Markowitz, Victor M., Kyrpides, Nikos C., Pati, Amrita
發表在 mBio (2015)

Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena

由 Xiong, Jie, Yang, Wentao, Chen, Kai, Jiang, Chuanqi, Ma, Yang, Chai, Xiaocui, Yan, Guanxiong, Wang, Guangying, Yuan, Dongxia, Liu, Yifan, Bidwell, Shelby L., Zafar, Nikhat, Hadjithomas, Michalis, Krishnakumar, Vivek, Coyne, Robert S., Orias, Eduardo, Miao, Wei
發表在 PLoS Biol (2019)

IMG/M: integrated genome and metagenome comparative data analysis system

由 Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Palaniappan, Krishna, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Andersen, Evan, Huntemann, Marcel, Varghese, Neha, Hadjithomas, Michalis, Tennessen, Kristin, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C.
發表在 Nucleic Acids Res (2017)

Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds

由 Jiao, Jian-Yu, Carro, Lorena, Liu, Lan, Gao, Xiao-Yang, Zhang, Xiao-Tong, Hozzein, Wael N., Lapidus, Alla, Huntemann, Marcel, Reddy, T. B. K., Varghese, Neha, Hadjithomas, Michalis, Ivanova, Natalia N., Göker, Markus, Pillay, Manoj, Eisen, Jonathan A., Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C., Li, Wen-Jun
發表在 Stand Genomic Sci (2017)

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

由 Seshadri, Rekha, Leahy, Sinead C, Attwood, Graeme T, Teh, Koon Hoong, Lambie, Suzanne C, Cookson, Adrian L, Eloe-Fadrosh, Emiley A, Pavlopoulos, Georgios A, Hadjithomas, Michalis, Varghese, Neha J, Paez-Espino, David, Perry, Rechelle, Henderson, Gemma, Creevey, Christopher J, Terrapon, Nicolas, Lapebie, Pascal, Drula, Elodie, Lombard, Vincent, Rubin, Edward, Kyrpides, Nikos C, Henrissat, Bernard, Woyke, Tanja, Ivanova, Natalia N, Kelly, William J
發表在 Nat Biotechnol (2018)

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes

由 Lorenzi, Hernan, Khan, Asis, Behnke, Michael S., Namasivayam, Sivaranjani, Swapna, Lakshmipuram S., Hadjithomas, Michalis, Karamycheva, Svetlana, Pinney, Deborah, Brunk, Brian P., Ajioka, James W., Ajzenberg, Daniel, Boothroyd, John C., Boyle, Jon P., Dardé, Marie L., Diaz-Miranda, Maria A., Dubey, Jitender P., Fritz, Heather M., Gennari, Solange M., Gregory, Brian D., Kim, Kami, Saeij, Jeroen P. J., Su, Chunlei, White, Michael W., Zhu, Xing-Quan, Howe, Daniel K., Rosenthal, Benjamin M., Grigg, Michael E., Parkinson, John, Liu, Liang, Kissinger, Jessica C., Roos, David S., David Sibley, L
發表在 Nat Commun (2016)

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

由 Hamilton, Eileen P, Kapusta, Aurélie, Huvos, Piroska E, Bidwell, Shelby L, Zafar, Nikhat, Tang, Haibao, Hadjithomas, Michalis, Krishnakumar, Vivek, Badger, Jonathan H, Caler, Elisabet V, Russ, Carsten, Zeng, Qiandong, Fan, Lin, Levin, Joshua Z, Shea, Terrance, Young, Sarah K, Hegarty, Ryan, Daza, Riza, Gujja, Sharvari, Wortman, Jennifer R, Birren, Bruce W, Nusbaum, Chad, Thomas, Jainy, Carey, Clayton M, Pritham, Ellen J, Feschotte, Cédric, Noto, Tomoko, Mochizuki, Kazufumi, Papazyan, Romeo, Taverna, Sean D, Dear, Paul H, Cassidy-Hanley, Donna M, Xiong, Jie, Miao, Wei, Orias, Eduardo, Coyne, Robert S
發表在 eLife (2016)

Total Synthesis of a Functional Designer Eukaryotic Chromosome

由 Annaluru, Narayana, Muller, Héloïse, Mitchell, Leslie A., Ramalingam, Sivaprakash, Stracquadanio, Giovanni, Richardson, Sarah M., Dymond, Jessica S., Kuang, Zheng, Scheifele, Lisa Z., Cooper, Eric M., Cai, Yizhi, Zeller, Karen, Agmon, Neta, Han, Jeffrey S., Hadjithomas, Michalis, Tullman, Jennifer, Caravelli, Katrina, Cirelli, Kimberly, Guo, Zheyuan, London, Viktoriya, Yeluru, Apurva, Murugan, Sindurathy, Kandavelou, Karthikeyan, Agier, Nicolas, Fischer, Gilles, Yang, Kun, Martin, J. Andrew, Bilgel, Murat, Bohutski, Pavlo, Boulier, Kristin M., Capaldo, Brian J., Chang, Joy, Charoen, Kristie, Choi, Woo Jin, Deng, Peter, DiCarlo, James E., Doong, Judy, Dunn, Jessilyn, Feinberg, Jason I., Fernandez, Christopher, Floria, Charlotte E., Gladowski, David, Hadidi, Pasha, Ishizuka, Isabel, Jabbari, Javaneh, Lau, Calvin Y.L., Lee, Pablo A., Li, Sean, Lin, Denise, Linder, Matthias E., Ling, Jonathan, Liu, Jaime, Liu, Jonathan, London, Mariya, Ma, Henry, Mao, Jessica, McDade, Jessica E., McMillan, Alexandra, Moore, Aaron M., Oh, Won Chan, Ouyang, Yu, Patel, Ruchi, Paul, Marina, Paulsen, Laura C., Qiu, Judy, Rhee, Alex, Rubashkin, Matthew G., Soh, Ina Y., Sotuyo, Nathaniel E., Srinivas, Venkatesh, Suarez, Allison, Wong, Andy, Wong, Remus, Xie, Wei Rose, Xu, Yijie, Yu, Allen T., Koszul, Romain, Bader, Joel S., Boeke, Jef D., Chandrasegaran, Srinivasan
出版 2014

Minimum Information about a Biosynthetic Gene cluster

由 Medema, Marnix H, Kottmann, Renzo, Yilmaz, Pelin, Cummings, Matthew, Biggins, John B, Blin, Kai, de Bruijn, Irene, Chooi, Yit Heng, Claesen, Jan, Coates, R Cameron, Cruz-Morales, Pablo, Duddela, Srikanth, Düsterhus, Stephanie, Edwards, Daniel J, Fewer, David P, Garg, Neha, Geiger, Christoph, Gomez-Escribano, Juan Pablo, Greule, Anja, Hadjithomas, Michalis, Haines, Anthony S, Helfrich, Eric J N, Hillwig, Matthew L, Ishida, Keishi, Jones, Adam C, Jones, Carla S, Jungmann, Katrin, Kegler, Carsten, Kim, Hyun Uk, Kötter, Peter, Krug, Daniel, Masschelein, Joleen, Melnik, Alexey V, Mantovani, Simone M, Monroe, Emily A, Moore, Marcus, Moss, Nathan, Nützmann, Hans-Wilhelm, Pan, Guohui, Pati, Amrita, Petras, Daniel, Reen, F Jerry, Rosconi, Federico, Rui, Zhe, Tian, Zhenhua, Tobias, Nicholas J, Tsunematsu, Yuta, Wiemann, Philipp, Wyckoff, Elizabeth, Yan, Xiaohui, Yim, Grace, Yu, Fengan, Xie, Yunchang, Aigle, Bertrand, Apel, Alexander K, Balibar, Carl J, Balskus, Emily P, Barona-Gómez, Francisco, Bechthold, Andreas, Bode, Helge B, Borriss, Rainer, Brady, Sean F, Brakhage, Axel A, Caffrey, Patrick, Cheng, Yi-Qiang, Clardy, Jon, Cox, Russell J, De Mot, René, Donadio, Stefano, Donia, Mohamed S, van der Donk, Wilfred A, Dorrestein, Pieter C, Doyle, Sean, Driessen, Arnold J M, Ehling-Schulz, Monika, Entian, Karl-Dieter, Fischbach, Michael A, Gerwick, Lena, Gerwick, William H, Gross, Harald, Gust, Bertolt, Hertweck, Christian, Höfte, Monica, Jensen, Susan E, Ju, Jianhua, Katz, Leonard, Kaysser, Leonard, Klassen, Jonathan L, Keller, Nancy P, Kormanec, Jan, Kuipers, Oscar P, Kuzuyama, Tomohisa, Kyrpides, Nikos C, Kwon, Hyung-Jin, Lautru, Sylvie, Lavigne, Rob, Lee, Chia Y, Linquan, Bai, Liu, Xinyu, Liu, Wen, Luzhetskyy, Andriy, Mahmud, Taifo, Mast, Yvonne, Méndez, Carmen, Metsä-Ketelä, Mikko, Micklefield, Jason, Mitchell, Douglas A, Moore, Bradley S, Moreira, Leonilde M, Müller, Rolf, Neilan, Brett A, Nett, Markus, Nielsen, Jens, O’Gara, Fergal, Oikawa, Hideaki, Osbourn, Anne, Osburne, Marcia S, Ostash, Bohdan, Payne, Shelley M, Pernodet, Jean-Luc, Petricek, Miroslav, Piel, Jörn, Ploux, Olivier, Raaijmakers, Jos M, Salas, José A, Schmitt, Esther K, Scott, Barry, Seipke, Ryan F, Shen, Ben, Sherman, David H, Sivonen, Kaarina, Smanski, Michael J, Sosio, Margherita, Stegmann, Evi, Süssmuth, Roderich D, Tahlan, Kapil, Thomas, Christopher M, Tang, Yi, Truman, Andrew W, Viaud, Muriel, Walton, Jonathan D, Walsh, Christopher T, Weber, Tilmann, van Wezel, Gilles P, Wilkinson, Barrie, Willey, Joanne M, Wohlleben, Wolfgang, Wright, Gerard D, Ziemert, Nadine, Zhang, Changsheng, Zotchev, Sergey B, Breitling, Rainer, Takano, Eriko, Glöckner, Frank Oliver
發表在 Nat Chem Biol (2015)