Writing DNA with GenoCAD™

Por Czar, Michael J., Cai, Yizhi, Peccoud, Jean
Publicado em 2009

GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs

Por Cai, Yizhi, Wilson, Mandy L., Peccoud, Jean
Publicado em 2010

Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars

Por Cai, Yizhi, Lux, Matthew W., Adam, Laura, Peccoud, Jean
Publicado em 2009

Smart DNA Fabrication Using Sound Waves: Applying Acoustic Dispensing Technologies to Synthetic Biology

Por Kanigowska, Paulina, Shen, Yue, Zheng, Yijing, Rosser, Susan, Cai, Yizhi
Publicado no JALA Charlottesv Va (2016)

PaperClip: rapid multi-part DNA assembly from existing libraries

Por Trubitsyna, Maryia, Michlewski, Gracjan, Cai, Yizhi, Elfick, Alistair, French, Christopher E.
Publicado no Nucleic Acids Res (2014)

Multichange Isothermal Mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA

Por Mitchell, Leslie A., Cai, Yizhi, Taylor, Martin, Noronha, Anne Marie, Chuang, James, Dai, Lixin, Boeke, Jef D.
Publicado em 2013

Sequence verification of synthetic DNA by assembly of sequencing reads

Por Wilson, Mandy L., Cai, Yizhi, Hanlon, Regina, Taylor, Samantha, Chevreux, Bastien, Setubal, João C., Tyler, Brett M., Peccoud, Jean
Publicado em 2013

Intrinsic biocontainment: Multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes

Por Cai, Yizhi, Agmon, Neta, Choi, Woo Jin, Ubide, Alba, Stracquadanio, Giovanni, Caravelli, Katrina, Hao, Haiping, Bader, Joel S., Boeke, Jef D.
Publicado no Proc Natl Acad Sci U S A (2015)

YeastFab: the design and construction of standard biological parts for metabolic engineering in Saccharomyces cerevisiae

Por Guo, Yakun, Dong, Junkai, Zhou, Tong, Auxillos, Jamie, Li, Tianyi, Zhang, Weimin, Wang, Lihui, Shen, Yue, Luo, Yisha, Zheng, Yijing, Lin, Jiwei, Chen, Guo-Qiang, Wu, Qingyu, Cai, Yizhi, Dai, Junbiao
Publicado no Nucleic Acids Res (2015)

Versatile genetic assembly system (VEGAS) to assemble pathways for expression in S. cerevisiae

Por Mitchell, Leslie A., Chuang, James, Agmon, Neta, Khunsriraksakul, Chachrit, Phillips, Nick A., Cai, Yizhi, Truong, David M., Veerakumar, Ashan, Wang, Yuxuan, Mayorga, María, Blomquist, Paul, Sadda, Praneeth, Trueheart, Joshua, Boeke, Jef D.
Publicado no Nucleic Acids Res (2015)

Targeted Development of Registries of Biological Parts

Por Peccoud, Jean, Blauvelt, Megan F., Cai, Yizhi, Cooper, Kristal L., Crasta, Oswald, DeLalla, Emily C., Evans, Clive, Folkerts, Otto, Lyons, Blair M., Mane, Shrinivasrao P., Shelton, Rebecca, Sweede, Matthew A., Waldon, Sally A.
Publicado em 2008

Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae

Por Agmon, Neta, Tang, Zuojian, Yang, Kun, Sutter, Ben, Ikushima, Shigehito, Cai, Yizhi, Caravelli, Katrina, Martin, James A., Sun, Xiaoji, Choi, Woo Jin, Zhang, Allen, Stracquadanio, Giovanni, Hao, Haiping, Tu, Benjamin P., Fenyo, David, Bader, Joel S., Boeke, Jef D.
Publicado no Proc Natl Acad Sci U S A (2017)

SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes

Por Shen, Yue, Stracquadanio, Giovanni, Wang, Yun, Yang, Kun, Mitchell, Leslie A., Xue, Yaxin, Cai, Yizhi, Chen, Tai, Dymond, Jessica S., Kang, Kang, Gong, Jianhui, Zeng, Xiaofan, Zhang, Yongfen, Li, Yingrui, Feng, Qiang, Xu, Xun, Wang, Jun, Wang, Jian, Yang, Huanming, Boeke, Jef D., Bader, Joel S.
Publicado no Genome Res (2016)

3D organization of synthetic and scrambled chromosomes

Por Mercy, Guillaume, Mozziconacci, Julien, Scolari, Vittore F., Yang, Kun, Zhao, Guanghou, Thierry, Agnès, Luo, Yisha, Mitchell, Leslie A., Shen, Michael, Shen, Yue, Walker, Roy, Zhang, Weimin, Wu, Yi, Xie, Ze-xiong, Luo, Zhouqing, Cai, Yizhi, Dai, Junbiao, Yang, Huanming, Yuan, Ying-Jin, Boeke, Jef D., Bader, Joel S., Muller, Héloïse, Koszul, Romain
Publicado no Science (2017)

SBOL Visual: A Graphical Language for Genetic Designs

Por Quinn, Jacqueline Y., Cox, Robert Sidney, Adler, Aaron, Beal, Jacob, Bhatia, Swapnil, Cai, Yizhi, Chen, Joanna, Clancy, Kevin, Galdzicki, Michal, Hillson, Nathan J., Le Novère, Nicolas, Maheshwari, Akshay J., McLaughlin, James Alastair, Myers, Chris J., P, Umesh, Pocock, Matthew, Rodriguez, Cesar, Soldatova, Larisa, Stan, Guy-Bart V., Swainston, Neil, Wipat, Anil, Sauro, Herbert M.
Publicado no PLoS Biol (2015)

Deep functional analysis of synII, a 770 kb synthetic yeast chromosome

Por Shen, Yue, Wang, Yun, Chen, Tai, Gao, Feng, Gong, Jianhui, Abramczyk, Dariusz, Walker, Roy, Zhao, Hongcui, Chen, Shihong, Liu, Wei, Luo, Yisha, Müller, Carolin A., Paul-Dubois-Taine, Adrien, Alver, Bonnie, Stracquadanio, Giovanni, Mitchell, Leslie A., Luo, Zhouqing, Fan, Yanqun, Zhou, Baojin, Wen, Bo, Tan, Fengji, Wang, Yujia, Zi, Jin, Xie, Zexiong, Li, Bingzhi, Yang, Kun, Richardson, Sarah M., Jiang, Hui, French, Christopher E., Nieduszynski, Conrad A., Koszul, Romain, Marston, Adele L., Yuan, Yingjin, Wang, Jian, Bader, Joel S., Dai, Junbiao, Boeke, Jef D., Xu, Xun, Cai, Yizhi, Yang, Huanming
Publicado no Science (2017)

Bug mapping and fitness testing of chemically synthesized chromosome X

Por Wu, Yi, Li, Bing-Zhi, Zhao, Meng, Mitchell, Leslie A., Xie, Ze-Xiong, Lin, Qiu-Hui, Wang, Xia, Xiao, Wen-Hai, Wang, Ying, Zhou, Xiao, Liu, Hong, Li, Xia, Ding, Ming-Zhu, Liu, Duo, Zhang, Lu, Liu, Bao-Li, Wu, Xiao-Le, Li, Fei-Fei, Dong, Xiu-Tao, Jia, Bin, Zhang, Wen-Zheng, Jiang, Guo-Zhen, Liu, Yue, Bai, Xue, Song, Tian-Qing, Chen, Yan, Zhou, Si-Jie, Zhu, Rui-Ying, Gao, Feng, Kuang, Zheng, Wang, Xuya, Shen, Michael, Yang, Kun, Stracquadanio, Giovanni, Richardson, Sarah M., Lin, Yicong, Wang, Lihui, Walker, Roy, Luo, Yisha, Ma, Ping-Sheng, Yang, Huanming, Cai, Yizhi, Dai, Junbiao, Bader, Joel S., Boeke, Jef D., Yuan, Ying-Jin
Publicado no Science (2017)

Total Synthesis of a Functional Designer Eukaryotic Chromosome

Por Annaluru, Narayana, Muller, Héloïse, Mitchell, Leslie A., Ramalingam, Sivaprakash, Stracquadanio, Giovanni, Richardson, Sarah M., Dymond, Jessica S., Kuang, Zheng, Scheifele, Lisa Z., Cooper, Eric M., Cai, Yizhi, Zeller, Karen, Agmon, Neta, Han, Jeffrey S., Hadjithomas, Michalis, Tullman, Jennifer, Caravelli, Katrina, Cirelli, Kimberly, Guo, Zheyuan, London, Viktoriya, Yeluru, Apurva, Murugan, Sindurathy, Kandavelou, Karthikeyan, Agier, Nicolas, Fischer, Gilles, Yang, Kun, Martin, J. Andrew, Bilgel, Murat, Bohutski, Pavlo, Boulier, Kristin M., Capaldo, Brian J., Chang, Joy, Charoen, Kristie, Choi, Woo Jin, Deng, Peter, DiCarlo, James E., Doong, Judy, Dunn, Jessilyn, Feinberg, Jason I., Fernandez, Christopher, Floria, Charlotte E., Gladowski, David, Hadidi, Pasha, Ishizuka, Isabel, Jabbari, Javaneh, Lau, Calvin Y.L., Lee, Pablo A., Li, Sean, Lin, Denise, Linder, Matthias E., Ling, Jonathan, Liu, Jaime, Liu, Jonathan, London, Mariya, Ma, Henry, Mao, Jessica, McDade, Jessica E., McMillan, Alexandra, Moore, Aaron M., Oh, Won Chan, Ouyang, Yu, Patel, Ruchi, Paul, Marina, Paulsen, Laura C., Qiu, Judy, Rhee, Alex, Rubashkin, Matthew G., Soh, Ina Y., Sotuyo, Nathaniel E., Srinivas, Venkatesh, Suarez, Allison, Wong, Andy, Wong, Remus, Xie, Wei Rose, Xu, Yijie, Yu, Allen T., Koszul, Romain, Bader, Joel S., Boeke, Jef D., Chandrasegaran, Srinivasan
Publicado em 2014