Mass spectrometry tools and workflows for revealing microbial chemistry

Por Luzzatto-Knaan, Tal, Melnik, Alexey V., Dorrestein, Pieter C.
Publicado no Analyst (2015)

Mass Spectrometry Based Molecular 3D-Cartography of Plant Metabolites

Por Floros, Dimitrios J., Petras, Daniel, Kapono, Clifford A., Melnik, Alexey V., Ling, Tie-Jun, Knight, Rob, Dorrestein, Pieter C.
Publicado no Front Plant Sci (2017)

Lifestyle chemistries from phones for individual profiling

Por Bouslimani, Amina, Melnik, Alexey V., Xu, Zhenjiang, Amir, Amnon, da Silva, Ricardo R., Wang, Mingxun, Bandeira, Nuno, Alexandrov, Theodore, Knight, Rob, Dorrestein, Pieter C.
Publicado no Proc Natl Acad Sci U S A (2016)

Natural Products as Mediators of Disease

Por Garg, Neha, Luzzatto-Knaan, Tal, Melnik, Alexey V., Caraballo-Rodríguez, Andrés Mauricio, Floros, Dimitrios J., Petras, Daniel, Gregor, Rachel, Dorrestein, Pieter C., Phelan, Vanessa V.
Publicado no Nat Prod Rep (2016)

Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains based on Growth and Extraction Protocols

Por Crüsemann, Max, O’Neill, Ellis C., Larson, Charles B., Melnik, Alexey V., Floros, Dimitrios J, da Silva, Ricardo R., Jensen, Paul R., Dorrestein, Pieter C., Moore, Bradley S.
Publicado no J Nat Prod (2016)

Creating a 3D microbial and chemical snapshot of a human habitat

Por Kapono, Clifford A., Morton, James T., Bouslimani, Amina, Melnik, Alexey V., Orlinsky, Kayla, Knaan, Tal Luzzatto, Garg, Neha, Vázquez-Baeza, Yoshiki, Protsyuk, Ivan, Janssen, Stefan, Zhu, Qiyun, Alexandrov, Theodore, Smarr, Larry, Knight, Rob, Dorrestein, Pieter C.
Publicado no Sci Rep (2018)

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen

Por Garg, Neha, Zeng, Yi, Edlund, Anna, Melnik, Alexey V., Sanchez, Laura M., Mohimani, Hosein, Gurevich, Alexey, Miao, Vivian, Schiffler, Stefan, Lim, Yan Wei, Luzzatto-Knaan, Tal, Cai, Shengxin, Rohwer, Forest, Pevzner, Pavel A., Cichewicz, Robert H., Alexandrov, Theodore, Dorrestein, Pieter C.
Publicado no mSystems (2016)

From Sample to Multi-Omics Conclusions in under 48 Hours

Por Quinn, Robert A., Navas-Molina, Jose A., Hyde, Embriette R., Song, Se Jin, Vázquez-Baeza, Yoshiki, Humphrey, Greg, Gaffney, James, Minich, Jeremiah J., Melnik, Alexey V., Herschend, Jakob, DeReus, Jeff, Durant, Austin, Dutton, Rachel J., Khosroheidari, Mahdieh, Green, Clifford, da Silva, Ricardo, Dorrestein, Pieter C., Knight, Rob
Publicado no mSystems (2016)

Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides

Por Nguyen, Don D., Melnik, Alexey V., Koyama, Nobuhiro, Lu, Xiaowen, Schorn, Michelle, Fang, Jinshu, Aguinaldo, Kristen, Lincecum, Tommie L., Ghequire, Maarten G. K., Carrion, Victor J., Cheng, Tina L., Duggan, Brendan M., Malone, Jacob G., Mauchline, Tim H., Sanchez, Laura M., Kilpatrick, A. Marm, Raaijmakers, Jos M., De Mot, René, Moore, Bradley S., Medema, Marnix H., Dorrestein, Pieter C.
Publicado no Nat Microbiol (2016)

Antimicrobials from human skin commensal bacteria protect against Staphylococcus aureus and are deficient in atopic dermatitis

Por Nakatsuji, Teruaki, Chen, Tiffany H., Narala, Saisindhu, Chun, Kimberly A., Two, Aimee M., Yun, Tong, Shafiq, Faiza, Kotol, Paul F., Bouslimani, Amina, Melnik, Alexey V., Latif, Haythem, Kim, Ji-Nu, Lockhart, Alexandre, Artis, Keli, David, Gloria, Taylor, Patricia, Streib, Joanne, Dorrestein, Pieter C., Grier, Alex, Gill, Steven R., Zengler, Karsten, Hata, Tissa R., Leung, Donald Y. M., Gallo, Richard L.
Publicado no Sci Transl Med (2017)

Sharing and community curation of mass spectrometry data with GNPS

Por Wang, Mingxun, Carver, Jeremy J, Phelan, Vanessa V, Sanchez, Laura M, Garg, Neha, Peng, Yao, Nguyen, Don Duy, Watrous, Jeramie, Kapono, Clifford A, Luzzatto-Knaan, Tal, Porto, Carla, Bouslimani, Amina, Melnik, Alexey V, Meehan, Michael J, Liu, Wei-Ting, Crüsemann, Max, Boudreau, Paul D, Esquenazi, Eduardo, Sandoval-Calderón, Mario, Kersten, Roland D, Pace, Laura A, Quinn, Robert A, Duncan, Katherine R, Hsu, Cheng-Chih, Floros, Dimitrios J, Gavilan, Ronnie G, Kleigrewe, Karin, Northen, Trent, Dutton, Rachel J, Parrot, Delphine, Carlson, Erin E, Aigle, Bertrand, Michelsen, Charlotte F, Jelsbak, Lars, Sohlenkamp, Christian, Pevzner, Pavel, Edlund, Anna, McLean, Jeffrey, Piel, Jörn, Murphy, Brian T, Gerwick, Lena, Liaw, Chih-Chuang, Yang, Yu-Liang, Humpf, Hans-Ulrich, Maansson, Maria, Keyzers, Robert A, Sims, Amy C, Johnson, Andrew R., Sidebottom, Ashley M, Sedio, Brian E, Klitgaard, Andreas, Larson, Charles B, P., Cristopher A Boya, Torres-Mendoza, Daniel, Gonzalez, David J, Silva, Denise B, Marques, Lucas M, Demarque, Daniel P, Pociute, Egle, O'Neill, Ellis C, Briand, Enora, Helfrich, Eric J. N., Granatosky, Eve A, Glukhov, Evgenia, Ryffel, Florian, Houson, Hailey, Mohimani, Hosein, Kharbush, Jenan J, Zeng, Yi, Vorholt, Julia A, Kurita, Kenji L, Charusanti, Pep, McPhail, Kerry L, Nielsen, Kristian Fog, Vuong, Lisa, Elfeki, Maryam, Traxler, Matthew F, Engene, Niclas, Koyama, Nobuhiro, Vining, Oliver B, Baric, Ralph, Silva, Ricardo R, Mascuch, Samantha J, Tomasi, Sophie, Jenkins, Stefan, Macherla, Venkat, Hoffman, Thomas, Agarwal, Vinayak, Williams, Philip G, Dai, Jingqui, Neupane, Ram, Gurr, Joshua, Rodríguez, Andrés M. C., Lamsa, Anne, Zhang, Chen, Dorrestein, Kathleen, Duggan, Brendan M, Almaliti, Jehad, Allard, Pierre-Marie, Phapale, Prasad, Nothias, Louis-Felix, Alexandrov, Theodore, Litaudon, Marc, Wolfender, Jean-Luc, Kyle, Jennifer E, Metz, Thomas O, Peryea, Tyler, Nguyen, Dac-Trung, VanLeer, Danielle, Shinn, Paul, Jadhav, Ajit, Müller, Rolf, Waters, Katrina M, Shi, Wenyuan, Liu, Xueting, Zhang, Lixin, Knight, Rob, Jensen, Paul R, Palsson, Bernhard O, Pogliano, Kit, Linington, Roger G, Gutiérrez, Marcelino, Lopes, Norberto P, Gerwick, William H, Moore, Bradley S, Dorrestein, Pieter C, Bandeira, Nuno
Publicado no Nat Biotechnol (2016)

Minimum Information about a Biosynthetic Gene cluster

Por Medema, Marnix H, Kottmann, Renzo, Yilmaz, Pelin, Cummings, Matthew, Biggins, John B, Blin, Kai, de Bruijn, Irene, Chooi, Yit Heng, Claesen, Jan, Coates, R Cameron, Cruz-Morales, Pablo, Duddela, Srikanth, Düsterhus, Stephanie, Edwards, Daniel J, Fewer, David P, Garg, Neha, Geiger, Christoph, Gomez-Escribano, Juan Pablo, Greule, Anja, Hadjithomas, Michalis, Haines, Anthony S, Helfrich, Eric J N, Hillwig, Matthew L, Ishida, Keishi, Jones, Adam C, Jones, Carla S, Jungmann, Katrin, Kegler, Carsten, Kim, Hyun Uk, Kötter, Peter, Krug, Daniel, Masschelein, Joleen, Melnik, Alexey V, Mantovani, Simone M, Monroe, Emily A, Moore, Marcus, Moss, Nathan, Nützmann, Hans-Wilhelm, Pan, Guohui, Pati, Amrita, Petras, Daniel, Reen, F Jerry, Rosconi, Federico, Rui, Zhe, Tian, Zhenhua, Tobias, Nicholas J, Tsunematsu, Yuta, Wiemann, Philipp, Wyckoff, Elizabeth, Yan, Xiaohui, Yim, Grace, Yu, Fengan, Xie, Yunchang, Aigle, Bertrand, Apel, Alexander K, Balibar, Carl J, Balskus, Emily P, Barona-Gómez, Francisco, Bechthold, Andreas, Bode, Helge B, Borriss, Rainer, Brady, Sean F, Brakhage, Axel A, Caffrey, Patrick, Cheng, Yi-Qiang, Clardy, Jon, Cox, Russell J, De Mot, René, Donadio, Stefano, Donia, Mohamed S, van der Donk, Wilfred A, Dorrestein, Pieter C, Doyle, Sean, Driessen, Arnold J M, Ehling-Schulz, Monika, Entian, Karl-Dieter, Fischbach, Michael A, Gerwick, Lena, Gerwick, William H, Gross, Harald, Gust, Bertolt, Hertweck, Christian, Höfte, Monica, Jensen, Susan E, Ju, Jianhua, Katz, Leonard, Kaysser, Leonard, Klassen, Jonathan L, Keller, Nancy P, Kormanec, Jan, Kuipers, Oscar P, Kuzuyama, Tomohisa, Kyrpides, Nikos C, Kwon, Hyung-Jin, Lautru, Sylvie, Lavigne, Rob, Lee, Chia Y, Linquan, Bai, Liu, Xinyu, Liu, Wen, Luzhetskyy, Andriy, Mahmud, Taifo, Mast, Yvonne, Méndez, Carmen, Metsä-Ketelä, Mikko, Micklefield, Jason, Mitchell, Douglas A, Moore, Bradley S, Moreira, Leonilde M, Müller, Rolf, Neilan, Brett A, Nett, Markus, Nielsen, Jens, O’Gara, Fergal, Oikawa, Hideaki, Osbourn, Anne, Osburne, Marcia S, Ostash, Bohdan, Payne, Shelley M, Pernodet, Jean-Luc, Petricek, Miroslav, Piel, Jörn, Ploux, Olivier, Raaijmakers, Jos M, Salas, José A, Schmitt, Esther K, Scott, Barry, Seipke, Ryan F, Shen, Ben, Sherman, David H, Sivonen, Kaarina, Smanski, Michael J, Sosio, Margherita, Stegmann, Evi, Süssmuth, Roderich D, Tahlan, Kapil, Thomas, Christopher M, Tang, Yi, Truman, Andrew W, Viaud, Muriel, Walton, Jonathan D, Walsh, Christopher T, Weber, Tilmann, van Wezel, Gilles P, Wilkinson, Barrie, Willey, Joanne M, Wohlleben, Wolfgang, Wright, Gerard D, Ziemert, Nadine, Zhang, Changsheng, Zotchev, Sergey B, Breitling, Rainer, Takano, Eriko, Glöckner, Frank Oliver
Publicado no Nat Chem Biol (2015)