PTMphinder: an R package for PTM site localization and motif extraction from proteomic datasets

Por Wozniak, Jacob M., Gonzalez, David J.
Publicado no PeerJ (2019)

AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions

Por Korandla, Deepank R, Wozniak, Jacob M, Campeau, Anaamika, Gonzalez, David J, Wright, Erik S
Publicado no Bioinformatics (2019)

Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr

Por Lapek, John D., Lewinski, Mary K., Wozniak, Jacob M., Guatelli, John, Gonzalez, David J.
Publicado no Mol Cell Proteomics (2017)

Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis

Por Perera, Varahenage R., Lapek, John D., Newton, Gerald L., Gonzalez, David J., Pogliano, Kit
Publicado no PLoS One (2018)

N-Terminal ArgD Peptides from the Classical Staphylococcus aureus Agr System have cytotoxic and proinflammatory activities

Por Gonzalez, David J., Corriden, Ross, Akong-Moore, Kathryn, Olson, Joshua, Dorrestein, Pieter C., Nizet, Victor
Publicado no Chem Biol (2014)

Exposure of Mycobacterium abscessus to Environmental Stress and Clinically Used Antibiotics Reveals Common Proteome Response among Pathogenic Mycobacteria

Por Rojony, Rajoana, Danelishvili, Lia, Campeau, Anaamika, Wozniak, Jacob M., Gonzalez, David J., Bermudez, Luiz E.
Publicado no Microorganisms (2020)

Dissociation of DNA damage sensing by endoglycosidase HPSE

Por Agelidis, Alex, Suryawanshi, Rahul K., Patil, Chandrashekhar D., Campeau, Anaamika, Gonzalez, David J., Shukla, Deepak
Publicado no iScience (2021)

Tamoxifen Augments the Innate Immune Function of Neutrophils Through Modulation of Intracellular Ceramide

Por Corriden, Ross, Hollands, Andrew, Olson, Joshua, Derieux, Jaclyn, Lopez, Justine, Chang, John T., Gonzalez, David J., Nizet, Victor
Publicado no Nat Commun (2015)

Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules

Por Kersten, Roland D., Ziemert, Nadine, Gonzalez, David J., Duggan, Brendan M., Nizet, Victor, Dorrestein, Pieter C., Moore, Bradley S.
Publicado em 2013

Quantitative analysis of Mycobacterium avium subsp. hominissuis proteome in response to antibiotics and during exposure to different environmental conditions

Por Rojony, Rajoana, Martin, Matthew, Campeau, Anaamika, Wozniak, Jacob M., Gonzalez, David J., Jaiswal, Pankaj, Danelishvili, L., Bermudez, Luiz E.
Publicado no Clin Proteomics (2019)

Organ-level protein networks as a reference for the host effects of the microbiome

Por Mills, Robert H., Wozniak, Jacob M., Vrbanac, Alison, Campeau, Anaamika, Chassaing, Benoit, Gewirtz, Andrew, Knight, Rob, Gonzalez, David J.
Publicado no Genome Res (2020)

Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry

Por Gonzalez, David J., Haste, Nina M., Hollands, Andrew, Fleming, Tinya C., Hamby, Matthew, Pogliano, Kit, Nizet, Victor, Dorrestein, Pieter C.
Publicado em 2011

Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A

Por Yamanaka, Kazuya, Reynolds, Kirk A., Kersten, Roland D., Ryan, Katherine S., Gonzalez, David J., Nizet, Victor, Dorrestein, Pieter C., Moore, Bradley S.
Publicado em 2014

Identification of a human skin commensal bacterium that selectively kills Cutibacterium acnes

Por O’Neill, Alan M., Nakatsuji, Teruaki, Hayachi, Asumi, Williams, Michael R., Mills, Robert H., Gonzalez, David J., Gallo, Richard L.
Publicado no J Invest Dermatol (2020)

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

Por Mills, Robert H., Vázquez-Baeza, Yoshiki, Zhu, Qiyun, Jiang, Lingjing, Gaffney, James, Humphrey, Greg, Smarr, Larry, Knight, Rob, Gonzalez, David J.
Publicado no mSystems (2019)

Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer

Por Chandrashekar, Darshan Shimoga, Golonka, Rachel M., Yeoh, Beng San, Gonzalez, David J., Heikenwälder, Mathias, Gerwirtz, Andrew T., Varambally, Sooryanarayana, Vijay-Kumar, Matam
Publicado no PLoS One (2020)

Optimization of carbon and energy utilization through differential translational efficiency

Por Al-Bassam, Mahmoud M., Kim, Ji-Nu, Zaramela, Livia S., Kellman, Benjamin P., Zuniga, Cristal, Wozniak, Jacob M., Gonzalez, David J., Zengler, Karsten
Publicado no Nat Commun (2018)

Molecular dissection of Chagas induced cardiomyopathy reveals central disease associated and druggable signaling pathways

Por Wozniak, Jacob M., Silva, Tatiana Araújo, Thomas, Diane, Siqueira-Neto, Jair L., McKerrow, James H., Gonzalez, David J., Calvet, Claudia M.
Publicado no PLoS Negl Trop Dis (2020)

Group B Streptococcus Biofilm Regulatory Protein A Contributes to Bacterial Physiology and Innate Immune Resistance

Por Patras, Kathryn A, Derieux, Jaclyn, Al-Bassam, Mahmoud M, Adiletta, Nichole, Vrbanac, Alison, Lapek, John D, Zengler, Karsten, Gonzalez, David J, Nizet, Victor
Publicado no J Infect Dis (2018)

Quantitative Multiplex Substrate Profiling of Peptidases by Mass Spectrometry

Por Lapek, John D., Jiang, Zhenze, Wozniak, Jacob M., Arutyunova, Elena, Wang, Steven C, Lemieux, M. Joanne, Gonzalez, David J., O'Donoghue, Anthony J.
Publicado no Mol Cell Proteomics (2019)