MapMi: automated mapping of microRNA loci

Por Guerra-Assunção, José Afonso, Enright, Anton J
Publicado em 2010

Large-scale analysis of microRNA evolution

Por Guerra-Assunção, José Afonso, Enright, Anton J
Publicado em 2012

Three‐Dimensional Model of Human Nicotinamide Nucleotide Transhydrogenase (NNT) and Sequence‐Structure Analysis of its Disease‐Causing Variations

Por Metherell, Louise A, Guerra‐Assunção, José Afonso, Sternberg, Michael J, David, Alessia
Publicado no Hum Mutat (2016)

Cathepsin-L Can Resist Lysis by Human Serum in Trypanosoma brucei brucei

Por Alsford, Sam, Currier, Rachel B., Guerra-Assunção, José Afonso, Clark, Taane G., Horn, David
Publicado em 2014

BCCTBbp: the Breast Cancer Campaign Tissue Bank bioinformatics portal

Por Cutts, Rosalind J., Guerra-Assunção, José Afonso, Gadaleta, Emanuela, Dayem Ullah, Abu Z., Chelala, Claude
Publicado no Nucleic Acids Res (2014)

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

Por Coll, Francesc, McNerney, Ruth, Guerra-Assunção, José Afonso, Glynn, Judith R., Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Pain, Arnab, Martin, Nigel, Clark, Taane G.
Publicado em 2014

Genome-Wide Saturation Mutagenesis of Burkholderia pseudomallei K96243 Predicts Essential Genes and Novel Targets for Antimicrobial Development

Por Moule, Madeleine G., Hemsley, Claudia M., Seet, Qihui, Guerra-Assunção, José Afonso, Lim, Jiali, Sarkar-Tyson, Mitali, Clark, Taane G., Tan, Patrick B. O., Titball, Richard W., Cuccui, Jon, Wren, Brendan W.
Publicado em 2014

Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia

Por Camps, Carme, Saini, Harpreet K, Mole, David R, Choudhry, Hani, Reczko, Martin, Guerra-Assunção, José Afonso, Tian, Ya-Min, Buffa, Francesca M, Harris, Adrian L, Hatzigeorgiou, Artemis G, Enright, Anton J, Ragoussis, Jiannis
Publicado em 2014

Characterization of New Virulence Factors Involved in the Intracellular Growth and Survival of Burkholderia pseudomallei

Por Moule, Madeleine G., Spink, Natasha, Willcocks, Sam, Lim, Jiali, Guerra-Assunção, José Afonso, Cia, Felipe, Champion, Olivia L., Senior, Nicola J., Atkins, Helen S., Clark, Taane, Bancroft, Gregory J., Cuccui, Jon, Wren, Brendan W.
Publicado no Infect Immun (2016)

Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi

Por Glynn, Judith R., Guerra-Assunção, José Afonso, Houben, Rein M. G. J., Sichali, Lifted, Mzembe, Themba, Mwaungulu, Lorrain K., Mwaungulu, J. Nimrod, McNerney, Ruth, Khan, Palwasha, Parkhill, Julian, Crampin, Amelia C., Clark, Taane G.
Publicado no PLoS One (2015)

PolyTB: A genomic variation map for Mycobacterium tuberculosis

Por Coll, Francesc, Preston, Mark, Guerra-Assunção, José Afonso, Hill-Cawthorn, Grant, Harris, David, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Drobniewski, Francis, Gagneux, Sebastien, Glynn, Judith R., Pain, Arnab, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane G.
Publicado em 2014

Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalenc...

Por Guerra-Assunção, José Afonso, Houben, Rein M. G. J., Crampin, Amelia C., Mzembe, Themba, Mallard, Kim, Coll, Francesc, Khan, Palwasha, Banda, Louis, Chiwaya, Arthur, Pereira, Rui P. A., McNerney, Ruth, Harris, David, Parkhill, Julian, Clark, Taane G., Glynn, Judith R.
Publicado no J Infect Dis (2015)

Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

Por Coll, Francesc, McNerney, Ruth, Preston, Mark D, Guerra-Assunção, José Afonso, Warry, Andrew, Hill-Cawthorne, Grant, Mallard, Kim, Nair, Mridul, Miranda, Anabela, Alves, Adriana, Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Hasan, Zahra, Hasan, Rumina, Glynn, Judith R, Martin, Nigel, Pain, Arnab, Clark, Taane G
Publicado no Genome Med (2015)

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data

Por Hu, Min, Ayub, Qasim, Guerra-Assunção, José Afonso, Long, Quan, Ning, Zemin, Huang, Ni, Romero, Irene Gallego, Mamanova, Lira, Akan, Pelin, Liu, Xin, Coffey, Alison J., Turner, Daniel J., Swerdlow, Harold, Burton, John, Quail, Michael A., Conrad, Donald F., Enright, Anton J., Tyler-Smith, Chris, Xue, Yali
Publicado em 2011

Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations

Por Abdallah, Abdallah M., Hill-Cawthorne, Grant A., Otto, Thomas D., Coll, Francesc, Guerra-Assunção, José Afonso, Gao, Ge, Naeem, Raeece, Ansari, Hifzur, Malas, Tareq B., Adroub, Sabir A., Verboom, Theo, Ummels, Roy, Zhang, Huoming, Panigrahi, Aswini Kumar, McNerney, Ruth, Brosch, Roland, Clark, Taane G., Behr, Marcel A., Bitter, Wilbert, Pain, Arnab
Publicado no Sci Rep (2015)

Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue

Por Parts, Leopold, Hedman, Åsa K., Keildson, Sarah, Knights, Andrew J., Abreu-Goodger, Cei, van de Bunt, Martijn, Guerra-Assunção, José Afonso, Bartonicek, Nenad, van Dongen, Stijn, Mägi, Reedik, Nisbet, James, Barrett, Amy, Rantalainen, Mattias, Nica, Alexandra C., Quail, Michael A., Small, Kerrin S., Glass, Daniel, Enright, Anton J., Winn, John, Deloukas, Panos, Dermitzakis, Emmanouil T., McCarthy, Mark I., Spector, Timothy D., Durbin, Richard, Lindgren, Cecilia M.
Publicado em 2012

Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma

Por Okosun, Jessica, Wolfson, Rachel L., Wang, Jun, Araf, Shamzah, Wilkins, Lucy, Castellano, Brian M., Escudero-Ibarz, Leire, Al Seraihi, Ahad Fahad, Richter, Julia, Bernhart, Stephan H., Efeyan, Alejo, Iqbal, Sameena, Matthews, Janet, Clear, Andrew, Guerra-Assunção, José Afonso, Bödör, Csaba, Quentmeier, Hilmar, Mansbridge, Christopher, Johnson, Peter, Davies, Andrew, Strefford, Jonathan C., Packham, Graham, Barrans, Sharon, Jack, Andrew, Du, Ming-Qing, Calaminici, Maria, Lister, T. Andrew, Auer, Rebecca, Montoto, Silvia, Gribben, John G., Siebert, Reiner, Chelala, Claude, Zoncu, Roberto, Sabatini, David M., Fitzgibbon, Jude
Publicado no Nat Genet (2015)

The BioMart community portal: an innovative alternative to large, centralized data repositories

Por Smedley, Damian, Haider, Syed, Durinck, Steffen, Pandini, Luca, Provero, Paolo, Allen, James, Arnaiz, Olivier, Awedh, Mohammad Hamza, Baldock, Richard, Barbiera, Giulia, Bardou, Philippe, Beck, Tim, Blake, Andrew, Bonierbale, Merideth, Brookes, Anthony J., Bucci, Gabriele, Buetti, Iwan, Burge, Sarah, Cabau, Cédric, Carlson, Joseph W., Chelala, Claude, Chrysostomou, Charalambos, Cittaro, Davide, Collin, Olivier, Cordova, Raul, Cutts, Rosalind J., Dassi, Erik, Genova, Alex Di, Djari, Anis, Esposito, Anthony, Estrella, Heather, Eyras, Eduardo, Fernandez-Banet, Julio, Forbes, Simon, Free, Robert C., Fujisawa, Takatomo, Gadaleta, Emanuela, Garcia-Manteiga, Jose M., Goodstein, David, Gray, Kristian, Guerra-Assunção, José Afonso, Haggarty, Bernard, Han, Dong-Jin, Han, Byung Woo, Harris, Todd, Harshbarger, Jayson, Hastings, Robert K., Hayes, Richard D., Hoede, Claire, Hu, Shen, Hu, Zhi-Liang, Hutchins, Lucie, Kan, Zhengyan, Kawaji, Hideya, Keliet, Aminah, Kerhornou, Arnaud, Kim, Sunghoon, Kinsella, Rhoda, Klopp, Christophe, Kong, Lei, Lawson, Daniel, Lazarevic, Dejan, Lee, Ji-Hyun, Letellier, Thomas, Li, Chuan-Yun, Lio, Pietro, Liu, Chu-Jun, Luo, Jie, Maass, Alejandro, Mariette, Jerome, Maurel, Thomas, Merella, Stefania, Mohamed, Azza Mostafa, Moreews, Francois, Nabihoudine, Ibounyamine, Ndegwa, Nelson, Noirot, Céline, Perez-Llamas, Cristian, Primig, Michael, Quattrone, Alessandro, Quesneville, Hadi, Rambaldi, Davide, Reecy, James, Riba, Michela, Rosanoff, Steven, Saddiq, Amna Ali, Salas, Elisa, Sallou, Olivier, Shepherd, Rebecca, Simon, Reinhard, Sperling, Linda, Spooner, William, Staines, Daniel M., Steinbach, Delphine, Stone, Kevin, Stupka, Elia, Teague, Jon W., Dayem Ullah, Abu Z., Wang, Jun, Ware, Doreen, Wong-Erasmus, Marie, Youens-Clark, Ken, Zadissa, Amonida, Zhang, Shi-Jian, Kasprzyk, Arek
Publicado no Nucleic Acids Res (2015)