The Phusion Assembler

Por Mullikin, James C., Ning, Zemin
Publicado em 2003

Out of the sequencer and into the wiki as we face new challenges in genome informatics

Por Ning, Zemin, Montgomery, Stephen B
Publicado em 2010

Next-generation sequencing and large genome assemblies

Por Henson, Joseph, Tischler, German, Ning, Zemin
Publicado em 2012

SSAHA: A Fast Search Method for Large DNA Databases

Por Ning, Zemin, Cox, Anthony J., Mullikin, James C.
Publicado em 2001

Assessing the gene space in draft genomes

Por Parra, Genis, Bradnam, Keith, Ning, Zemin, Keane, Thomas, Korf, Ian
Publicado em 2009

HI: haplotype improver using paired-end short reads

Por Long, Quan, MacArthur, Daniel, Ning, Zemin, Tyler-Smith, Chris
Publicado em 2009

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

Por Ye, Kai, Schulz, Marcel H., Long, Quan, Apweiler, Rolf, Ning, Zemin
Publicado em 2009

Expansion of CORE-SINEs in the genome of the Tasmanian devil

Por Nilsson, Maria A, Janke, Axel, Murchison, Elizabeth P, Ning, Zemin, Hallström, Björn M
Publicado em 2012

Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of GC-biased genomes

Por Kozarewa, Iwanka, Ning, Zemin, Quail, Michael A., Sanders, Mandy J., Berriman, Matthew, Turner, Daniel J.
Publicado em 2009

PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data

Por Zhang, Yanju, Lameijer, Eric-Wubbo, 't Hoen, Peter A. C., Ning, Zemin, Slagboom, P. Eline, Ye, Kai
Publicado em 2012

PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing

Por Long, Quan, Jeffares, Daniel C., Zhang, Qingrun, Ye, Kai, Nizhynska, Viktoria, Ning, Zemin, Tyler-Smith, Chris, Nordborg, Magnus
Publicado em 2011

The piggyBac Transposon Displays Local and Distant Reintegration Preferences and Can Cause Mutations at Noncanonical Integration Sites

Por Li, Meng Amy, Pettitt, Stephen J., Eckert, Sabine, Ning, Zemin, Rice, Stephen, Cadiñanos, Juan, Yusa, Kosuke, Conte, Nathalie, Bradley, Allan
Publicado em 2013

The Leukocyte Receptor Complex in Chicken Is Characterized by Massive Expansion and Diversification of Immunoglobulin-Like Loci

Por Laun, Katja, Coggill, Penny, Palmer, Sophie, Sims, Sarah, Ning, Zemin, Ragoussis, Jiannis, Volpi, Emanuela, Wilson, Natalie, Beck, Stephan, Ziegler, Andreas, Volz, Armin
Publicado em 2006

Mobilization of giant piggyBac transposons in the mouse genome

Por Li, Meng Amy, Turner, Daniel J., Ning, Zemin, Yusa, Kosuke, Liang, Qi, Eckert, Sabine, Rad, Lena, Fitzgerald, Tomas W., Craig, Nancy L., Bradley, Allan
Publicado em 2011

Finishing the finished human chromosome 22 sequence

Por Cole, Charlotte G, McCann, Owen T, Collins, John E, Oliver, Karen, Willey, David, Gribble, Susan M, Yang, Fengtang, McLaren, Karen, Rogers, Jane, Ning, Zemin, Beare, David M, Dunham, Ian
Publicado em 2008

TranscriptSNPView: a genome-wide catalog of mouse coding variation

Por Cunningham, Fiona, Rios, Daniel, Griffiths, Mark, Smith, James, Ning, Zemin, Cox, Tony, Flicek, Paul, Marin-Garcin, Pablo, Herrero, Javier, Rogers, Jane, van der Weyden, Louise, Bradley, Allan, Birney, Ewan, Adams, David J
Publicado em 2006

Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride le...

Por Sudbery, Ian, Stalker, Jim, Simpson, Jared T, Keane, Thomas, Rust, Alistair G, Hurles, Matthew E, Walter, Klaudia, Lynch, Dee, Teboul, Lydia, Brown, Steve D, Li, Heng, Ning, Zemin, Nadeau, Joseph H, Croniger, Colleen M, Durbin, Richard, Adams, David J
Publicado em 2009

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data

Por Hu, Min, Ayub, Qasim, Guerra-Assunção, José Afonso, Long, Quan, Ning, Zemin, Huang, Ni, Romero, Irene Gallego, Mamanova, Lira, Akan, Pelin, Liu, Xin, Coffey, Alison J., Turner, Daniel J., Swerdlow, Harold, Burton, John, Quail, Michael A., Conrad, Donald F., Enright, Anton J., Tyler-Smith, Chris, Xue, Yali
Publicado em 2011

TRANSMISSIBLE DOG CANCER GENOME REVEALS THE ORIGIN AND HISTORY OF AN ANCIENT CELL LINEAGE

Por Murchison, Elizabeth P., Wedge, David C., Alexandrov, Ludmil B., Fu, Beiyuan, Martincorena, Inigo, Ning, Zemin, Tubio, Jose M. C., Werner, Emma I., Allen, Jan, De Nardi, Andrigo Barboza, Donelan, Edward M., Marino, Gabriele, Fassati, Ariberto, Campbell, Peter J., Yang, Fengtang, Burt, Austin, Weiss, Robin A., Stratton, Michael R.
Publicado em 2014

Genetic Basis of Y-Linked Hearing Impairment

Por Wang, Qiuju, Xue, Yali, Zhang, Yujun, Long, Quan, Yang, Fengtang, Turner, Daniel J., Fitzgerald, Tomas, Ng, Bee Ling, Zhao, Yali, Chen, Yuan, Liu, Qingjie, Yang, Weiyan, Han, Dongyi, Quail, Michael A., Swerdlow, Harold, Burton, John, Fahey, Ciara, Ning, Zemin, Hurles, Matthew E., Carter, Nigel P., Yang, Huanming, Tyler-Smith, Chris
Publicado em 2013