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SSAHA: A Fast Search Method for Large DNA Databases
We describe an algorithm, SSAHA (Sequence Search and Alignment by Hashing Algorithm), for performing fast searches on databases containing multiple gigabases of DNA. Sequences in the database are preprocessed by breaking them into consecutive k-tuples of k contiguous bases and then using a hash tabl...
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| Main Authors: | , , |
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| Formato: | Artigo |
| Idioma: | Inglês |
| Publicado em: |
Cold Spring Harbor Laboratory Press
2001
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| Assuntos: | |
| Acesso em linha: | https://ncbi.nlm.nih.gov/pmc/articles/PMC311141/ https://ncbi.nlm.nih.gov/pubmed/11591649 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.194201 |
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