Local Persistence of Novel MRSA Lineage after Hospital Ward Outbreak, Cambridge, UK, 2011–2013

le Toleman, Michelle S., Reuter, Sandra, Coll, Francesc, Harrison, Ewan M., Peacock, Sharon J.
Foilsithe in Emerg Infect Dis (2016)

Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets

le Leclerc, Quentin J., Naylor, Nichola R., Aiken, Alexander M., Coll, Francesc, Knight, Gwenan M.
Foilsithe in Wellcome Open Res (2020)

Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites

le Samad, Hanif, Coll, Francesc, Preston, Mark D., Ocholla, Harold, Fairhurst, Rick M., Clark, Taane G.
Foilsithe in PLoS Genet (2015)

Ferric Citrate Regulator FecR Is Translocated across the Bacterial Inner Membrane via a Unique Twin-Arginine Transport-Dependent Mechanism

le Passmore, Ian J., Dow, Jennifer M., Coll, Francesc, Cuccui, Jon, Palmer, Tracy, Wren, Brendan W.
Foilsithe in J Bacteriol (2020)

Genomic Surveillance of Methicillin-resistant Staphylococcus aureus: A Mathematical Early Modeling Study of Cost-effectiveness

le Dymond, Amy, Davies, Heather, Mealing, Stuart, Pollit, Vicki, Coll, Francesc, Brown, Nicholas M, Peacock, Sharon J
Foilsithe in Clin Infect Dis (2020)

rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree

le Wailan, Alexander M., Coll, Francesc, Heinz, Eva, Tonkin-Hill, Gerry, Corander, Jukka, Feasey, Nicholas A., Thomson, Nicholas R.
Foilsithe in Microb Genom (2019)

Defining metrics for whole-genome sequence analysis of MRSA in clinical practice

le Raven, Kathy E., Blane, Beth, Kumar, Narender, Leek, Danielle, Bragin, Eugene, Coll, Francesc, Parkhill, Julian, Peacock, Sharon J.
Foilsithe in Microb Genom (2020)

SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences

le Coll, Francesc, Mallard, Kim, Preston, Mark D., Bentley, Stephen, Parkhill, Julian, McNerney, Ruth, Martin, Nigel, Clark, Taane G.
Foilsithe 2012

Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England

le Harrison, Ewan M., Coll, Francesc, Toleman, Michelle S., Blane, Beth, Brown, Nicholas M., Török, M. Estee, Parkhill, Julian, Peacock, Sharon J.
Foilsithe in Sci Rep (2017)

Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of England

le Toleman, Michelle S., Reuter, Sandra, Coll, Francesc, Harrison, Ewan M., Blane, Beth, Brown, Nicholas M., Török, M. Estée, Parkhill, Julian, Peacock, Sharon J.
Foilsithe in J Infect Dis (2016)

Transient Silencing of Antibiotic Resistance by Mutation Represents a Significant Potential Source of Unanticipated Therapeutic Failure

le Kime, Louise, Randall, Christopher P., Banda, Frank I., Coll, Francesc, Wright, John, Richardson, Joseph, Empel, Joanna, Parkhill, Julian, O’Neill, Alex J.
Foilsithe in mBio (2019)

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan

le Ali, Asho, Hasan, Zahra, McNerney, Ruth, Mallard, Kim, Hill-Cawthorne, Grant, Coll, Francesc, Nair, Mridul, Pain, Arnab, Clark, Taane G., Hasan, Rumina
Foilsithe in PLoS One (2015)

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis

le Benavente, Ernest D, Coll, Francesc, Furnham, Nick, McNerney, Ruth, Glynn, Judith R, Campino, Susana, Pain, Arnab, Mohareb, Fady R, Clark, Taane G
Foilsithe in BMC Bioinformatics (2015)

Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing

le Raven, Kathy E., Gouliouris, Theodore, Brodrick, Hayley, Coll, Francesc, Brown, Nicholas M., Reynolds, Rosy, Reuter, Sandra, Török, M. Estée, Parkhill, Julian, Peacock, Sharon J.
Foilsithe in Clin Infect Dis (2017)

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

le Coll, Francesc, McNerney, Ruth, Guerra-Assunção, José Afonso, Glynn, Judith R., Perdigão, João, Viveiros, Miguel, Portugal, Isabel, Pain, Arnab, Martin, Nigel, Clark, Taane G.
Foilsithe 2014

Assessing the sustainability of contrasting land use scenarios through the Socioecological Integrated Analysis (SIA) of the metropolitan green infrastructure in Barcelona

le Padró, Roc, La Rota-Aguilera, María José, Giocoli, Annalisa, Cirera, Jacob, Coll, Francesc, Pons, Manel, Pino, Joan, Pili, Silvia, Serrano, Tarik, Villalba, Gara, Marull, Joan
Foilsithe in Landsc Urban Plan (2020)

Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting

le Toleman, Michelle S, Watkins, Emmeline R, Williams, Tom, Blane, Beth, Sadler, Belinda, Harrison, Ewan M, Coll, Francesc, Parkhill, Julian, Nazareth, Bernadette, Brown, Nicholas M, Peacock, Sharon J
Foilsithe in Clin Infect Dis (2017)

Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

le Coll, Francesc, Raven, Kathy E, Knight, Gwenan M, Blane, Beth, Harrison, Ewan M, Leek, Danielle, Enoch, David A, Brown, Nicholas M, Parkhill, Julian, Peacock, Sharon J
Foilsithe in Lancet Microbe (2020)

Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

le Jamrozy, Dorota, Coll, Francesc, Mather, Alison E., Harris, Simon R., Harrison, Ewan M., MacGowan, Alasdair, Karas, Andreas, Elston, Tony, Estée Török, M., Parkhill, Julian, Peacock, Sharon J.
Foilsithe in BMC Genomics (2017)

Prospective genomic surveillance of methicillin-resistant Staphylococcus aureus (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013

le Toleman, Michelle S, Reuter, Sandra, Jamrozy, Dorota, Wilson, Hayley J, Blane, Beth, Harrison, Ewan M, Coll, Francesc, Hope, Russell J, Kearns, Angela, Parkhill, Julian, Peacock, Sharon J, Török, M Estée
Foilsithe in Euro Surveill (2019)