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rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree

The ability to distinguish different circulating pathogen clones from each other is a fundamental requirement to understand the epidemiology of infectious diseases. Phylogenetic analysis of genomic data can provide a powerful platform to identify lineages within bacterial populations, and thus infor...

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Detalhes bibliográficos
Publicado no:Microb Genom
Main Authors: Wailan, Alexander M., Coll, Francesc, Heinz, Eva, Tonkin-Hill, Gerry, Corander, Jukka, Feasey, Nicholas A., Thomson, Nicholas R.
Formato: Artigo
Idioma:Inglês
Publicado em: Microbiology Society 2019
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6521585/
https://ncbi.nlm.nih.gov/pubmed/30920366
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000264
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