JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

Yazar: Butterfield, Yaron S., Kreitzman, Maayan, Thiessen, Nina, Corbett, Richard D., Li, Yisu, Pang, Johnson, Ma, Yussanne P., Jones, Steven J. M., Birol, İnanç
Baskı/Yayın Bilgisi 2014

Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA

Yazar: Haile, Simon, Corbett, Richard D., Bilobram, Steve, Mungall, Karen, Grande, Bruno M., Kirk, Heather, Pandoh, Pawan, MacLeod, Tina, McDonald, Helen, Bala, Miruna, Coope, Robin J., Moore, Richard A., Mungall, Andrew J., Zhao, Yongjun, Morin, Ryan D., Jones, Steven J., Marra, Marco A.
Yayımlandı PLoS One (2019)

Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing

Yazar: Haile, Simon, Corbett, Richard D., MacLeod, Tina, Bilobram, Steve, Smailus, Duane, Tsao, Philip, Kirk, Heather, McDonald, Helen, Pandoh, Pawan, Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Schein, Jacquie, Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
Yayımlandı BMC Genomics (2017)

Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples

Yazar: Haile, Simon, Corbett, Richard D, Bilobram, Steve, Bye, Morgan H, Kirk, Heather, Pandoh, Pawan, Trinh, Eva, MacLeod, Tina, McDonald, Helen, Bala, Miruna, Miller, Diane, Novik, Karen, Coope, Robin J, Moore, Richard A, Zhao, Yongjun, Mungall, Andrew J, Ma, Yussanne, Holt, Rob A, Jones, Steven J, Marra, Marco A
Yayımlandı Nucleic Acids Res (2019)

Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis

Yazar: Haile, Simon, Pandoh, Pawan, McDonald, Helen, Corbett, Richard D., Tsao, Philip, Kirk, Heather, MacLeod, Tina, Jones, Martin, Bilobram, Steve, Brooks, Denise, Smailus, Duane, Steidl, Christian, Scott, David W., Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
Yayımlandı PLoS One (2017)

A Distributed Whole Genome Sequencing Benchmark Study

Yazar: Corbett, Richard D., Eveleigh, Robert, Whitney, Joe, Barai, Namrata, Bourgey, Mathieu, Chuah, Eric, Johnson, Joanne, Moore, Richard A., Moradin, Neda, Mungall, Karen L., Pereira, Sergio, Reuter, Miriam S., Thiruvahindrapuram, Bhooma, Wintle, Richard F., Ragoussis, Jiannis, Strug, Lisa J., Herbrick, Jo-Anne, Aziz, Naveed, Jones, Steven J. M., Lathrop, Mark, Scherer, Stephen W., Staffa, Alfredo, Mungall, Andrew J.
Yayımlandı Front Genet (2020)

A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells

Yazar: Haile, Simon, Corbett, Richard D., LeBlanc, Veronique G., Wei, Lisa, Pleasance, Stephen, Bilobram, Steve, Nip, Ka Ming, Brown, Kirstin, Trinh, Eva, Smith, Jillian, Trinh, Diane L., Bala, Miruna, Chuah, Eric, Coope, Robin J. N., Moore, Richard A., Mungall, Andrew J., Mungall, Karen L., Zhao, Yongjun, Hirst, Martin, Aparicio, Samuel, Birol, Inanc, Jones, Steven J. M., Marra, Marco A.
Yayımlandı Front Genet (2021)

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

Yazar: Swanson, Lucas, Robertson, Gordon, Mungall, Karen L, Butterfield, Yaron S, Chiu, Readman, Corbett, Richard D, Docking, T Roderick, Hogge, Donna, Jackman, Shaun D, Moore, Richard A, Mungall, Andrew J, Nip, Ka Ming, Parker, Jeremy DK, Qian, Jenny Qing, Raymond, Anthony, Sung, Sandy, Tam, Angela, Thiessen, Nina, Varhol, Richard, Wang, Sherry, Yorukoglu, Deniz, Zhao, YongJun, Hoodless, Pamela A, Sahinalp, S Cenk, Karsan, Aly, Birol, Inanc
Baskı/Yayın Bilgisi 2013

Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing

Yazar: Morin, Ryan D., Mungall, Karen, Pleasance, Erin, Mungall, Andrew J., Goya, Rodrigo, Huff, Ryan D., Scott, David W., Ding, Jiarui, Roth, Andrew, Chiu, Readman, Corbett, Richard D., Chan, Fong Chun, Mendez-Lago, Maria, Trinh, Diane L., Bolger-Munro, Madison, Taylor, Greg, Hadj Khodabakhshi, Alireza, Ben-Neriah, Susana, Pon, Julia, Meissner, Barbara, Woolcock, Bruce, Farnoud, Noushin, Rogic, Sanja, Lim, Emilia L., Johnson, Nathalie A., Shah, Sohrab, Jones, Steven, Steidl, Christian, Holt, Robert, Birol, Inanc, Moore, Richard, Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A.
Baskı/Yayın Bilgisi 2013

The genetic landscape of high-risk neuroblastoma

Yazar: Pugh, Trevor J., Morozova, Olena, Attiyeh, Edward F., Asgharzadeh, Shahab, Wei, Jun S., Auclair, Daniel, Carter, Scott L., Cibulskis, Kristian, Hanna, Megan, Kiezun, Adam, Kim, Jaegil, Lawrence, Michael S., Lichenstein, Lee, McKenna, Aaron, Pedamallu, Chandra Sekhar, Ramos, Alex H., Shefler, Erica, Sivachenko, Andrey, Sougnez, Carrie, Stewart, Chip, Ally, Adrian, Birol, Inanc, Chiu, Readman, Corbett, Richard D., Hirst, Martin, Jackman, Shaun D., Kamoh, Baljit, Khodabakshi, Alireza Hadj, Krzywinski, Martin, Lo, Allan, Moore, Richard A., Mungall, Karen L., Qian, Jenny, Tam, Angela, Thiessen, Nina, Zhao, Yongjun, Cole, Kristina A., Diamond, Maura, Diskin, Sharon J., Mosse, Yael P., Wood, Andrew C., Ji, Lingyun, Sposto, Richard, Badgett, Thomas, London, Wendy B., Moyer, Yvonne, Gastier-Foster, Julie M., Smith, Malcolm A., Auvil, Jaime M. Guidry, Gerhard, Daniela S., Hogarty, Michael D., Jones, Steven J. M., Lander, Eric S., Gabriel, Stacey B., Getz, Gad, Seeger, Robert C., Khan, Javed, Marra, Marco A., Meyerson, Matthew, Maris, John M.
Baskı/Yayın Bilgisi 2013

Spatial heterogeneity in medulloblastoma

Yazar: Morrissy, A Sorana, Cavalli, Florence MG, Remke, Marc, Ramaswamy, Vijay, Shih, David JH, Holgado, Borja L, Farooq, Hamza, Donovan, Laura K, Garzia, Livia, Agnihotri, Sameer, Kiehna, Erin N, Mercier, Eloi, Mayoh, Chelsea, Papillon-Cavanagh, Simon, Nikbakht, Hamid, Gayden, Tenzin, Torchia, Jonathon, Picard, Daniel, Merino, Diana M, Luu, Betty, Wu, Xiaochong, Horswell, Stuart, Thompson, Yuan Yao, Hovestadt, Volker, Northcott, Paul A, Jones, David TW, Peacock, John, Wang, Xin, Mack, Stephen C, Reimand, Juri, Albrecht, Steffen, Fontebasso, Adam M, Thiessen, Nina, Li, Yisu, Schein, Jacqueline E, Lee, Darlene, Carlsen, Rebecca, Mayo, Michael, Tse, Kane, Tam, Angela, Dhalla, Noreen, Ally, Adrian, Chuah, Eric, Cheng, Young, Plettner, Patrick, Li, Haiyan I, Corbett, Richard D, Wong, Tina, Long, William, Loukides, James, Buczkowicz, Pawel, Hawkins, Cynthia E, Tabori, Uri, Rood, Brian R, Myseros, John S, Packer, Roger J, Korshunov, Andrey, Lichter, Peter, Kool, Marcel, Pfister, Stefan M, Schüller, Ulrich, Dirks, Peter, Huang, Annie, Bouffet, Eric, Rutka, James T, Bader, Gary D, Swanton, Charles, Ma, Yusanne, Moore, Richard A, Mungall, Andrew J, Majewski, Jacek, Jones, Steven JM, Das, Sunit, Malkin, David, Jabado, Nada, Marra, Marco A, Taylor, Michael D
Yayımlandı Nat Genet (2017)

Subgroup specific structural variation across 1,000 medulloblastoma genomes

Yazar: Northcott, Paul A, Shih, David JH, Peacock, John, Garzia, Livia, Morrissy, Sorana, Zichner, Thomas, Stütz, Adrian M, Korshunov, Andrey, Reimand, Juri, Schumacher, Steven E, Beroukhim, Rameen, Ellison, David W, Marshall, Christian R, Lionel, Anath C, Mack, Stephen, Dubuc, Adrian, Yao, Yuan, Ramaswamy, Vijay, Luu, Betty, Rolider, Adi, Cavalli, Florence, Wang, Xin, Remke, Marc, Wu, Xiaochong, Chiu, Readman YB, Chu, Andy, Chuah, Eric, Corbett, Richard D, Hoad, Gemma R, Jackman, Shaun D, Li, Yisu, Lo, Allan, Mungall, Karen L, Nip, Ka Ming, Qian, Jenny Q, Raymond, Anthony GJ, Thiessen, Nina, Varhol, Richard J, Birol, Inanc, Moore, Richard A, Mungall, Andrew J, Holt, Robert, Kawauchi, Daisuke, Roussel, Martine F, Kool, Marcel, Jones, David TW, Witt, Hendrick, Fernandez-L, Africa, Kenney, Anna M, Wechsler-Reya, Robert J, Dirks, Peter, Aviv, Tzvi, Grajkowska, Wieslawa A, Perek-Polnik, Marta, Haberler, Christine C, Delattre, Olivier, Reynaud, Stéphanie S, Doz, François F, Pernet-Fattet, Sarah S, Cho, Byung-Kyu, Kim, Seung-Ki, Wang, Kyu-Chang, Scheurlen, Wolfram, Eberhart, Charles G, Fèvre-Montange, Michelle, Jouvet, Anne, Pollack, Ian F, Fan, Xing, Muraszko, Karin M, Gillespie, G. Yancey, Di Rocco, Concezio, Massimi, Luca, Michiels, Erna MC, Kloosterhof, Nanne K, French, Pim J, Kros, Johan M, Olson, James M, Ellenbogen, Richard G, Zitterbart, Karel, Kren, Leos, Thompson, Reid C, Cooper, Michael K, Lach, Boleslaw, McLendon, Roger E, Bigner, Darell D, Fontebasso, Adam, Albrecht, Steffen, Jabado, Nada, Lindsey, Janet C, Bailey, Simon, Gupta, Nalin, Weiss, William A, Bognár, László, Klekner, Almos, Van Meter, Timothy E, Kumabe, Toshihiro, Tominaga, Teiji, Elbabaa, Samer K, Leonard, Jeffrey R, Rubin, Joshua B, Liau, Linda M, Van Meir, Erwin G, Fouladi, Maryam, Nakamura, Hideo, Cinalli, Giuseppe, Garami, Miklós, Hauser, Peter, Saad, Ali G, Iolascon, Achille, Jung, Shin, Carlotti, Carlos G, Vibhakar, Rajeev, Ra, Young Shin, Robinson, Shenandoah, Zollo, Massimo, Faria, Claudia C, Chan, Jennifer A, Levy, Michael L, Sorensen, Poul HB, Meyerson, Matthew, Pomeroy, Scott L, Cho, Yoon-Jae, Bader, Gary D, Tabori, Uri, Hawkins, Cynthia E, Bouffet, Eric, Scherer, Stephen W, Rutka, James T, Malkin, David, Clifford, Steven C, Jones, Steven JM, Korbel, Jan O, Pfister, Stefan M, Marra, Marco A, Taylor, Michael D
Baskı/Yayın Bilgisi 2012

Divergent clonal selection dominates medulloblastoma at recurrence

Yazar: Morrissy, A. Sorana, Garzia, Livia, Shih, David J. H., Zuyderduyn, Scott, Huang, Xi, Skowron, Patryk, Remke, Marc, Cavalli, Florence M. G., Ramaswamy, Vijay, Lindsay, Patricia E., Jelveh, Salomeh, Donovan, Laura K., Wang, Xin, Luu, Betty, Zayne, Kory, Li, Yisu, Mayoh, Chelsea, Thiessen, Nina, Mercier, Eloi, Mungall, Karen L., Ma, Yusanne, Tse, Kane, Zeng, Thomas, Shumansky, Karey, Roth, Andrew J. L., Shah, Sohrab, Farooq, Hamza, Kijima, Noriyuki, Holgado, Borja L., Lee, John J. Y., Matan-Lithwick, Stuart, Liu, Jessica, Mack, Stephen C., Manno, Alex, Michealraj, K. A., Nor, Carolina, Peacock, John, Qin, Lei, Reimand, Juri, Rolider, Adi, Thompson, Yuan Y., Wu, Xiaochong, Pugh, Trevor, Ally, Adrian, Bilenky, Mikhail, Butterfield, Yaron S. N., Carlsen, Rebecca, Cheng, Young, Chuah, Eric, Corbett, Richard D., Dhalla, Noreen, He, An, Lee, Darlene, Li, Haiyan I., Long, William, Mayo, Michael, Plettner, Patrick, Qian, Jenny Q., Schein, Jacqueline E., Tam, Angela, Wong, Tina, Birol, Inanc, Zhao, Yongjun, Faria, Claudia C., Pimentel, José, Nunes, Sofia, Shalaby, Tarek, Grotzer, Michael, Pollack, Ian F., Hamilton, Ronald L., Li, Xiao-Nan, Bendel, Anne E., Fults, Daniel W., Walter, Andrew W., Kumabe, Toshihiro, Tominaga, Teiji, Collins, V. Peter, Cho, Yoon-Jae, Hoffman, Caitlin, Lyden, David, Wisoff, Jeffrey H., Garvin, James H., Stearns, Duncan S., Massimi, Luca, Schüller, Ulrich, Sterba, Jaroslav, Zitterbart, Karel, Puget, Stephanie, Ayrault, Olivier, Dunn, Sandra E., Tirapelli, Daniela P. C., Carlotti, Carlos G., Wheeler, Helen, Hallahan, Andrew R., Ingram, Wendy, MacDonald, Tobey J., Olson, Jeffrey J., Van Meir, Erwin G., Lee, Ji-Yeoun, Wang, Kyu-Chang, Kim, Seung-Ki, Cho, Byung-Kyu, Pietsch, Torsten, Fleischhack, Gudrun, Tippelt, Stephan, Ra, Young Shin, Bailey, Simon, Lindsey, Janet C., Clifford, Steven C., Eberhart, Charles G., Cooper, Michael K., Packer, Roger J., Massimino, Maura, Garre, Maria Luisa, Bartels, Ute, Tabori, Uri, Hawkins, Cynthia E., Dirks, Peter, Bouffet, Eric, Rutka, James T., Wechsler-Reya, Robert J., Weiss, William A., Collier, Lara S., Dupuy, Adam J., Korshunov, Andrey, Jones, David T. W., Kool, Marcel, Northcott, Paul A., Pfister, Stefan M., Largaespada, David A., Mungall, Andrew J., Moore, Richard A., Jabado, Nada, Bader, Gary D., Jones, Steven J. M., Malkin, David, Marra, Marco A., Taylor, Michael D.
Yayımlandı Nature (2016)