DNA methylation analysis improves the prognostication of acute myeloid leukemia

por Samimi, Hanie, Mehta, Isha, Docking, Thomas Roderick, Zainulabadeen, Aamir, Karsan, Aly, Zare, Habil
Publicado en EJHaem (2021)

Applications of Bayesian network models in predicting types of hematological malignancies

por Agrahari, Rupesh, Foroushani, Amir, Docking, T. Roderick, Chang, Linda, Duns, Gerben, Hudoba, Monika, Karsan, Aly, Zare, Habil
Publicado en Sci Rep (2018)

KLEAT: CLEAVAGE SITE ANALYSIS OF TRANSCRIPTOMES()

por Birol, Inanç, Raymond, Anthony, Chiu, Readman, Nip, Ka Ming, Jackman, Shaun D, Kreitzman, Maayan, Docking, T Roderick, Ennis, Catherine A, Robertson, A Gordon, Karsan, Aly
Publicado en Pac Symp Biocomput (2015)

Gene discovery for the bark beetle-vectored fungal tree pathogen <it>Grosmannia clavigera</it>

por Robertson Gordon, Liao Nancy Y, Docking T Roderick, Henderson Hannah, Li Maria, Wang Ye, Keeling Christopher I, DiGuistini Scott, Hesse-Orce Uljana, Holt Robert A, Jones Steven JM, Bohlmann Jörg, Breuil Colette
Publicado 2010-10-01

Gene discovery for the bark beetle-vectored fungal tree pathogen Grosmannia clavigera

por Hesse-Orce, Uljana, DiGuistini, Scott, Keeling, Christopher I, Wang, Ye, Li, Maria, Henderson, Hannah, Docking, T Roderick, Liao, Nancy Y, Robertson, Gordon, Holt, Robert A, Jones, Steven JM, Bohlmann, Jörg, Breuil, Colette
Publicado 2010

Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

por Chan, Queenie WT, Cornman, R Scott, Birol, Inanc, Liao, Nancy Y, Chan, Simon K, Docking, T Roderick, Jackman, Shaun D, Taylor, Greg A, Jones, Steven JM, de Graaf, Dirk C, Evans, Jay D, Foster, Leonard J
Publicado 2011

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

por DiGuistini, Scott, Liao, Nancy Y, Platt, Darren, Robertson, Gordon, Seidel, Michael, Chan, Simon K, Docking, T Roderick, Birol, Inanc, Holt, Robert A, Hirst, Martin, Mardis, Elaine, Marra, Marco A, Hamelin, Richard C, Bohlmann, Jörg, Breuil, Colette, Jones, Steven JM
Publicado 2009

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

por Swanson, Lucas, Robertson, Gordon, Mungall, Karen L, Butterfield, Yaron S, Chiu, Readman, Corbett, Richard D, Docking, T Roderick, Hogge, Donna, Jackman, Shaun D, Moore, Richard A, Mungall, Andrew J, Nip, Ka Ming, Parker, Jeremy DK, Qian, Jenny Qing, Raymond, Anthony, Sung, Sandy, Tam, Angela, Thiessen, Nina, Varhol, Richard, Wang, Sherry, Yorukoglu, Deniz, Zhao, YongJun, Hoodless, Pamela A, Sahinalp, S Cenk, Karsan, Aly, Birol, Inanc
Publicado 2013

A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia

por Docking, T. Roderick, Parker, Jeremy D. K., Jädersten, Martin, Duns, Gerben, Chang, Linda, Jiang, Jihong, Pilsworth, Jessica A., Swanson, Lucas A., Chan, Simon K., Chiu, Readman, Nip, Ka Ming, Mar, Samantha, Mo, Angela, Wang, Xuan, Martinez-Høyer, Sergio, Stubbins, Ryan J., Mungall, Karen L., Mungall, Andrew J., Moore, Richard A., Jones, Steven J. M., Birol, İnanç, Marra, Marco A., Hogge, Donna, Karsan, Aly
Publicado en Nat Commun (2021)

A regulatory toolbox of MiniPromoters to drive selective expression in the brain

por Portales-Casamar, Elodie, Swanson, Douglas J., Liu, Li, de Leeuw, Charles N., Banks, Kathleen G., Ho Sui, Shannan J., Fulton, Debra L., Ali, Johar, Amirabbasi, Mahsa, Arenillas, David J., Babyak, Nazar, Black, Sonia F., Bonaguro, Russell J., Brauer, Erich, Candido, Tara R., Castellarin, Mauro, Chen, Jing, Chen, Ying, Cheng, Jason C. Y., Chopra, Vik, Docking, T. Roderick, Dreolini, Lisa, D'Souza, Cletus A., Flynn, Erin K., Glenn, Randy, Hatakka, Kristi, Hearty, Taryn G., Imanian, Behzad, Jiang, Steven, Khorasan-zadeh, Shadi, Komljenovic, Ivana, Laprise, Stéphanie, Liao, Nancy Y., Lim, Jonathan S., Lithwick, Stuart, Liu, Flora, Liu, Jun, Lu, Meifen, McConechy, Melissa, McLeod, Andrea J., Milisavljevic, Marko, Mis, Jacek, O'Connor, Katie, Palma, Betty, Palmquist, Diana L., Schmouth, Jean-François, Swanson, Magdalena I., Tam, Bonny, Ticoll, Amy, Turner, Jenna L., Varhol, Richard, Vermeulen, Jenny, Watkins, Russell F., Wilson, Gary, Wong, Bibiana K. Y., Wong, Siaw H., Wong, Tony Y. T., Yang, George S., Ypsilanti, Athena R., Jones, Steven J. M., Holt, Robert A., Goldowitz, Daniel, Wasserman, Wyeth W., Simpson, Elizabeth M.
Publicado 2010

Assemblathon 1: A competitive assessment of de novo short read assembly methods

por Earl, Dent, Bradnam, Keith, St. John, John, Darling, Aaron, Lin, Dawei, Fass, Joseph, Yu, Hung On Ken, Buffalo, Vince, Zerbino, Daniel R., Diekhans, Mark, Nguyen, Ngan, Ariyaratne, Pramila Nuwantha, Sung, Wing-Kin, Ning, Zemin, Haimel, Matthias, Simpson, Jared T., Fonseca, Nuno A., Birol, İnanç, Docking, T. Roderick, Ho, Isaac Y., Rokhsar, Daniel S., Chikhi, Rayan, Lavenier, Dominique, Chapuis, Guillaume, Naquin, Delphine, Maillet, Nicolas, Schatz, Michael C., Kelley, David R., Phillippy, Adam M., Koren, Sergey, Yang, Shiaw-Pyng, Wu, Wei, Chou, Wen-Chi, Srivastava, Anuj, Shaw, Timothy I., Ruby, J. Graham, Skewes-Cox, Peter, Betegon, Miguel, Dimon, Michelle T., Solovyev, Victor, Seledtsov, Igor, Kosarev, Petr, Vorobyev, Denis, Ramirez-Gonzalez, Ricardo, Leggett, Richard, MacLean, Dan, Xia, Fangfang, Luo, Ruibang, Li, Zhenyu, Xie, Yinlong, Liu, Binghang, Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J., Yin, Shuangye, Sharpe, Ted, Hall, Giles, Kersey, Paul J., Durbin, Richard, Jackman, Shaun D., Chapman, Jarrod A., Huang, Xiaoqiu, DeRisi, Joseph L., Caccamo, Mario, Li, Yingrui, Jaffe, David B., Green, Richard E., Haussler, David, Korf, Ian, Paten, Benedict
Publicado 2011

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

por Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F
Publicado 2013