Meraculous: De Novo Genome Assembly with Short Paired-End Reads

অনুযায়ী Chapman, Jarrod A., Ho, Isaac, Sunkara, Sirisha, Luo, Shujun, Schroth, Gary P., Rokhsar, Daniel S.
প্রকাশিত 2011

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii

অনুযায়ী Lowry, David B, Hernandez, Kyle, Taylor, Samuel H, Meyer, Eli, Logan, Tierney L, Barry, Kerrie W, Chapman, Jarrod A, Rokhsar, Daniel S, Schmutz, Jeremy, Juenger, Thomas E
প্রকাশিত New Phytol (2015)

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

অনুযায়ী Chapman, Jarrod A, Mascher, Martin, Buluç, Aydın, Barry, Kerrie, Georganas, Evangelos, Session, Adam, Strnadova, Veronika, Jenkins, Jerry, Sehgal, Sunish, Oliker, Leonid, Schmutz, Jeremy, Yelick, Katherine A, Scholz, Uwe, Waugh, Robbie, Poland, Jesse A, Muehlbauer, Gary J, Stein, Nils, Rokhsar, Daniel S
প্রকাশিত Genome Biol (2015)

Insights into bilaterian evolution from three spiralian genomes

অনুযায়ী Simakov, Oleg, Marletaz, Ferdinand, Cho, Sung-Jin, Edsinger-Gonzales, Eric, Havlak, Paul, Hellsten, Uffe, Kuo, Dian-Han, Larsson, Tomas, Lv, Jie, Arendt, Detlev, Savage, Robert, Osoegawa, Kazutoyo, de Jong, Pieter, Grimwood, Jane, Chapman, Jarrod A., Shapiro, Harris, Aerts, Andrea, Otillar, Robert P., Terry, Astrid Y., Boore, Jeffrey L., Grigoriev, Igor V., Lindberg, David R., Seaver, Elaine C., Weisblat, David A., Putnam, Nicholas H., Rokhsar, Daniel S.
প্রকাশিত 2012

Genome evolution in the allotetraploid frog Xenopus laevis

অনুযায়ী Session, Adam M., Uno, Yoshinobu, Kwon, Taejoon, Chapman, Jarrod A., Toyoda, Atsushi, Takahashi, Shuji, Fukui, Akimasa, Hikosaka, Akira, Suzuki, Atsushi, Kondo, Mariko, van Heeringen, Simon J., Quigley, Ian, Heinz, Sven, Ogino, Hajime, Ochi, Haruki, Hellsten, Uffe, Lyons, Jessica B, Simakov, Oleg, Putnam, Nicholas, Stites, Jonathan, Kuroki, Yoko, Tanaka, Toshiaki, Michiue, Tatsuo, Watanabe, Minoru, Bogdanovic, Ozren, Lister, Ryan, Georgiou, Georgios, Paranjpe, Sarita S., van Kruijsbergen, Ila, Shu, Shengquiang, Carlson, Joseph, Kinoshita, Tsutomu, Ohta, Yuko, Mawaribuchi, Shuuji, Jenkins, Jerry, Grimwood, Jane, Schmutz, Jeremy, Mitros, Therese, Mozaffari, Sahar, Suzuki, Yutaka, Haramoto, Yoshikazu, Yamamoto, Takamasa S., Takagi, Chiyo, Heald, Rebecca, Miller, Kelly, Haudenschild, Christian, Kitzman, Jacob, Nakayama, Takuya, Izutsu, Yumi, Robert, Jacques, Fortriede, Joshua, Burns, Kevin, Lotay, Vaneet, Karimi, Kamran, Yasuoka, Yuuri, Dichmann, Darwin S., Flajnik, Martin F., Houston, Douglas W, Shendure, Jay, DuPasquier, Louis, Vize, Peter D., Zorn, Aaron M., Ito, Michihiko, Marcotte, Ed, Wallingford, John B., Ito, Yuzuru, Asashima, Makoto, Ueno, Naoto, Matsuda, Yoichi, Veenstra, Gert Jan C., Fujiyama, Asao, Harland, Richard M., Taira, Masanori, Rokhsar, Daniel S.
প্রকাশিত Nature (2016)

Assemblathon 1: A competitive assessment of de novo short read assembly methods

অনুযায়ী Earl, Dent, Bradnam, Keith, St. John, John, Darling, Aaron, Lin, Dawei, Fass, Joseph, Yu, Hung On Ken, Buffalo, Vince, Zerbino, Daniel R., Diekhans, Mark, Nguyen, Ngan, Ariyaratne, Pramila Nuwantha, Sung, Wing-Kin, Ning, Zemin, Haimel, Matthias, Simpson, Jared T., Fonseca, Nuno A., Birol, İnanç, Docking, T. Roderick, Ho, Isaac Y., Rokhsar, Daniel S., Chikhi, Rayan, Lavenier, Dominique, Chapuis, Guillaume, Naquin, Delphine, Maillet, Nicolas, Schatz, Michael C., Kelley, David R., Phillippy, Adam M., Koren, Sergey, Yang, Shiaw-Pyng, Wu, Wei, Chou, Wen-Chi, Srivastava, Anuj, Shaw, Timothy I., Ruby, J. Graham, Skewes-Cox, Peter, Betegon, Miguel, Dimon, Michelle T., Solovyev, Victor, Seledtsov, Igor, Kosarev, Petr, Vorobyev, Denis, Ramirez-Gonzalez, Ricardo, Leggett, Richard, MacLean, Dan, Xia, Fangfang, Luo, Ruibang, Li, Zhenyu, Xie, Yinlong, Liu, Binghang, Gnerre, Sante, MacCallum, Iain, Przybylski, Dariusz, Ribeiro, Filipe J., Yin, Shuangye, Sharpe, Ted, Hall, Giles, Kersey, Paul J., Durbin, Richard, Jackman, Shaun D., Chapman, Jarrod A., Huang, Xiaoqiu, DeRisi, Joseph L., Caccamo, Mario, Li, Yingrui, Jaffe, David B., Green, Richard E., Haussler, David, Korf, Ian, Paten, Benedict
প্রকাশিত 2011

The dynamic genome of Hydra

অনুযায়ী Chapman, Jarrod A., Kirkness, Ewen F., Simakov, Oleg, Hampson, Steven E., Mitros, Therese, Weinmaier, Therese, Rattei, Thomas, Balasubramanian, Prakash G., Borman, Jon, Busam, Dana, Disbennett, Kathryn, Pfannkoch, Cynthia, Sumin, Nadezhda, Sutton, Granger G., Viswanathan, Lakshmi Devi, Walenz, Brian, Goodstein, David M., Hellsten, Uffe, Kawashima, Takeshi, Prochnik, Simon E., Putnam, Nicholas H., Shu, Shengquiang, Blumberg, Bruce, Dana, Catherine E., Gee, Lydia, Kibler, Dennis F., Law, Lee, Lindgens, Dirk, Martinez, Daniel E., Peng, Jisong, Wigge, Philip A., Bertulat, Bianca, Guder, Corina, Nakamura, Yukio, Ozbek, Suat, Watanabe, Hiroshi, Khalturin, Konstantin, Hemmrich, Georg, Franke, André, Augustin, René, Fraune, Sebastian, Hayakawa, Eisuke, Hayakawa, Shiho, Hirose, Mamiko, Hwang, Jung Shan, Ikeo, Kazuho, Nishimiya-Fujisawa, Chiemi, Ogura, Atshushi, Takahashi, Toshio, Steinmetz, Patrick R. H., Zhang, Xiaoming, Aufschnaiter, Roland, Eder, Marie-Kristin, Gorny, Anne-Kathrin, Salvenmoser, Willi, Heimberg, Alysha M., Wheeler, Benjamin M., Peterson, Kevin J., Böttger, Angelika, Tischler, Patrick, Wolf, Alexander, Gojobori, Takashi, Remington, Karin A., Strausberg, Robert L., Venter, J. Craig, Technau, Ulrich, Hobmayer, Bert, Bosch, Thomas C. G., Holstein, Thomas W., Fujisawa, Toshitaka, Bode, Hans R., David, Charles N., Rokhsar, Daniel S., Steele, Robert E.
প্রকাশিত Nature (2010)

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

অনুযায়ী Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F
প্রকাশিত 2013