SOX10-regulated promoter use defines isoform-specific gene expression in Schwann cells

af Fogarty, Elizabeth A., Kitzman, Jacob O., Antonellis, Anthony
Udgivet i BMC Genomics (2020)

Genomic annotation of disease-associated variants reveals shared functional contexts

af Kyono, Yasuhiro, Kitzman, Jacob O., Parker, Stephen C. J.
Udgivet i Diabetologia (2019)

Experimental Evolution Identifies Vaccinia Virus Mutations in A24R and A35R That Antagonize the Protein Kinase R Pathway and Accompany Collapse of an Extragenic Gene Amplification

af Brennan, Greg, Kitzman, Jacob O., Shendure, Jay, Geballe, Adam P.
Udgivet i J Virol (2015)

Adaptive Gene Amplification As an Intermediate Step in the Expansion of Virus Host Range

af Brennan, Greg, Kitzman, Jacob O., Rothenburg, Stefan, Shendure, Jay, Geballe, Adam P.
Udgivet 2014

Massively Parallel Single Amino Acid Mutagenesis

af Kitzman, Jacob O., Starita, Lea M., Lo, Russell S., Fields, Stanley, Shendure, Jay
Udgivet i Nat Methods (2015)

Quantification, dynamic visualization, and validation of bias in ATAC-seq data with ataqv

af Orchard, Peter, Kyono, Yasuhiro, Hensley, John, Kitzman, Jacob O., Parker, Stephen C.J.
Udgivet i Cell Syst (2020)

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

af Nielsen, Cydney B., Shomron, Noam, Sandberg, Rickard, Hornstein, Eran, Kitzman, Jacob, Burge, Christopher B
Udgivet 2007

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

af Burton, Joshua N., Adey, Andrew, Patwardhan, Rupali P., Qiu, Ruolan, Kitzman, Jacob O., Shendure, Jay
Udgivet 2013

Massively parallel functional testing of MSH2 missense variants conferring Lynch syndrome risk

af Jia, Xiaoyan, Burugula, Bala Bharathi, Chen, Victor, Lemons, Rosemary M., Jayakody, Sajini, Maksutova, Mariam, Kitzman, Jacob O.
Udgivet i Am J Hum Genet (2021)

Chromatin information content landscapes inform transcription factor and DNA interactions

af D’Oliveira Albanus, Ricardo, Kyono, Yasuhiro, Hensley, John, Varshney, Arushi, Orchard, Peter, Kitzman, Jacob O., Parker, Stephen C. J.
Udgivet i Nat Commun (2021)

Poxviruses deploy genomic accordions to adapt rapidly against host antiviral defenses

af Elde, Nels C., Child, Stephanie J., Eickbush, Michael T., Kitzman, Jacob O., Rogers, Kelsey S., Shendure, Jay, Geballe, Adam P., Malik, Harmit S.
Udgivet 2012

Noninvasive fetal genome sequencing: a primer

af Snyder, Matthew W., Simmons, LaVone E., Kitzman, Jacob O., Santillan, Donna A., Santillan, Mark K., Gammill, Hilary S., Shendure, Jay
Udgivet 2013

Variant Interpretation: Functional Assays to the Rescue

af Starita, Lea M., Ahituv, Nadav, Dunham, Maitreya J., Kitzman, Jacob O., Roth, Frederick P., Seelig, Georg, Shendure, Jay, Fowler, Douglas M.
Udgivet i Am J Hum Genet (2017)

Global dynamics of stage-specific transcription factor binding during thymocyte development

af Hosoya, Tomonori, D’Oliveira Albanus, Ricardo, Hensley, John, Myers, Greggory, Kyono, Yasuhiro, Kitzman, Jacob, Parker, Stephen C. J., Engel, James Douglas
Udgivet i Sci Rep (2018)

Diversity of Human Copy Number Variation and Multicopy Genes

af Sudmant, Peter H., Kitzman, Jacob O., Antonacci, Francesca, Alkan, Can, Malig, Maika, Tsalenko, Anya, Sampas, Nick, Bruhn, Laurakay, Shendure, Jay, Eichler, Evan E.
Udgivet 2010

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

af Adey, Andrew, Burton, Joshua N., Kitzman, Jacob O., Hiatt, Joseph B., Lewis, Alexandra P., Martin, Beth K., Qiu, Ruolan, Lee, Choli, Shendure, Jay
Udgivet 2013

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

af Salipante, Stephen J., Roach, David J., Kitzman, Jacob O., Snyder, Matthew W., Stackhouse, Bethany, Butler-Wu, Susan M., Lee, Choli, Cookson, Brad T., Shendure, Jay
Udgivet i Genome Res (2015)

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

af Adey, Andrew, Kitzman, Jacob O., Burton, Joshua N., Daza, Riza, Kumar, Akash, Christiansen, Lena, Ronaghi, Mostafa, Amini, Sasan, L. Gunderson, Kevin, Steemers, Frank J., Shendure, Jay
Udgivet i Genome Res (2014)

Copy-Number Variation and False Positive Prenatal Aneuploidy Screening Results

af Snyder, Matthew W., Simmons, LaVone E., Kitzman, Jacob O., Coe, Bradley P., Henson, Jessica M., Daza, Riza M., Eichler, Evan E., Shendure, Jay, Gammill, Hilary S.
Udgivet i N Engl J Med (2015)

Massively Parallel Functional Analysis of BRCA1 RING Domain Variants

af Starita, Lea M., Young, David L., Islam, Muhtadi, Kitzman, Jacob O., Gullingsrud, Justin, Hause, Ronald J., Fowler, Douglas M., Parvin, Jeffrey D., Shendure, Jay, Fields, Stanley
Udgivet i Genetics (2015)