Accurate gene synthesis with tag-directed retrieval of sequence-verified DNA molecules

ανά Schwartz, Jerrod J, Lee, Choli, Shendure, Jay
Έκδοση 2012

Capturing native long-range contiguity by in situ library construction and optical sequencing

ανά Schwartz, Jerrod J., Lee, Choli, Hiatt, Joseph B., Adey, Andrew, Shendure, Jay
Έκδοση 2012

Massively parallel exon capture and library-free resequencing across 16 individuals

ανά Turner, Emily H., Lee, Choli, Ng, Sarah B., Nickerson, Deborah A., Shendure, Jay
Έκδοση 2009

Parallel, tag-directed assembly of locally derived short sequence reads

ανά Hiatt, Joseph B, Patwardhan, Rupali P, Turner, Emily H, Lee, Choli, Shendure, Jay
Έκδοση 2010

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

ανά Patwardhan, Rupali P, Lee, Choli, Litvin, Oren, Young, David L, Pe'er, Dana, Shendure, Jay
Έκδοση 2009

A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes

ανά Duan, Zhijun, Andronescu, Mirela, Schutz, Kevin, Lee, Choli, Shendure, Jay, Fields, Stanley, Noble, William S., Blau, C. Anthony
Έκδοση 2012

Sci-Hi-C: a single-cell Hi-C method for mapping 3D genome organization in large number of single cells

ανά Ramani, Vijay, Deng, Xinxian, Qiu, Ruolan, Lee, Choli, Disteche, Christine M, Noble, William S, Shendure, Jay, Duan, Zhijun
Τόπος έκδοσης Methods (2019)

A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

ανά Roach, David J., Burton, Joshua N., Lee, Choli, Stackhouse, Bethany, Butler-Wu, Susan M., Cookson, Brad T., Shendure, Jay, Salipante, Stephen J.
Τόπος έκδοσης PLoS Genet (2015)

Correction: A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota

ανά Roach, David J., Burton, Joshua N., Lee, Choli, Stackhouse, Bethany, Butler-Wu, Susan M., Cookson, Brad T., Shendure, Jay, Salipante, Stephen J.
Τόπος έκδοσης PLoS Genet (2017)

CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic Deletions

ανά Gasperini, Molly, Findlay, Gregory M., McKenna, Aaron, Milbank, Jennifer H., Lee, Choli, Zhang, Melissa D., Cusanovich, Darren A., Shendure, Jay
Τόπος έκδοσης Am J Hum Genet (2017)

A Three-Dimensional Model of the Yeast Genome

ανά Duan, Zhijun, Andronescu, Mirela, Schutz, Kevin, Mcllwain, Sean, Kim, Yoo Jung, Lee, Choli, Shendure, Jay, Fields, Stanley, Blau, C. Anthony, Noble, William S.
Έκδοση 2010

The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line

ανά Adey, Andrew, Burton, Joshua N., Kitzman, Jacob O., Hiatt, Joseph B., Lewis, Alexandra P., Martin, Beth K., Qiu, Ruolan, Lee, Choli, Shendure, Jay
Έκδοση 2013

Unsupervised manifold alignment for single-cell multi-omics data

ανά Singh, Ritambhara, Demetci, Pinar, Bonora, Giancarlo, Ramani, Vijay, Lee, Choli, Fang, He, Duan, Zhijun, Deng, Xinxian, Shendure, Jay, Disteche, Christine, Noble, William Stafford
Τόπος έκδοσης ACM BCB (2020)

Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains

ανά Salipante, Stephen J., Roach, David J., Kitzman, Jacob O., Snyder, Matthew W., Stackhouse, Bethany, Butler-Wu, Susan M., Lee, Choli, Cookson, Brad T., Shendure, Jay
Τόπος έκδοσης Genome Res (2015)

Recurrent Somatic Loss of TNFRSF14 in Classical Hodgkin Lymphoma

ανά Salipante, Stephen J., Adey, Andrew, Thomas, Anju, Lee, Choli, Liu, Yajuan J., Kumar, Akash, Lewis, Alexandra P., Wu, David, Fromm, Jonathan R., Shendure, Jay
Τόπος έκδοσης Genes Chromosomes Cancer (2015)

Biome representational in silico karyotyping

ανά Muthappan, Valliammai, Lee, Aaron Y., Lamprecht, Tamara L., Akileswaran, Lakshmi, Dintzis, Suzanne M., Lee, Choli, Magrini, Vincent, Mardis, Elaine R., Shendure, Jay, Van Gelder, Russell N.
Έκδοση 2011

Whole genome prediction for preimplantation genetic diagnosis

ανά Kumar, Akash, Ryan, Allison, Kitzman, Jacob O, Wemmer, Nina, Snyder, Matthew W, Sigurjonsson, Styrmir, Lee, Choli, Banjevic, Milena, Zarutskie, Paul W, Lewis, Alexandra P, Shendure, Jay, Rabinowitz, Matthew
Τόπος έκδοσης Genome Med (2015)

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data

ανά Kim, Hyeon-Jin, Yardımcı, Galip Gürkan, Bonora, Giancarlo, Ramani, Vijay, Liu, Jie, Qiu, Ruolan, Lee, Choli, Hesson, Jennifer, Ware, Carol B., Shendure, Jay, Duan, Zhijun, Noble, William Stafford
Τόπος έκδοσης PLoS Comput Biol (2020)

Comprehensive single cell transcriptional profiling of a multicellular organism

ανά Cao, Junyue, Packer, Jonathan S., Ramani, Vijay, Cusanovich, Darren A., Huynh, Chau, Daza, Riza, Qiu, Xiaojie, Lee, Choli, Furlan, Scott N., Steemers, Frank J., Adey, Andrew, Waterston, Robert H., Trapnell, Cole, Shendure, Jay
Τόπος έκδοσης Science (2017)

Targeted Capture and Massively Parallel Sequencing of Twelve Human Exomes

ανά Ng, Sarah B., Turner, Emily H., Robertson, Peggy D., Flygare, Steven D., Bigham, Abigail W., Lee, Choli, Shaffer, Tristan, Wong, Michelle, Bhattacharjee, Arindam, Eichler, Evan E., Bamshad, Michael, Nickerson, Deborah A., Shendure, Jay
Έκδοση 2009