Finding the fifth base: Genome-wide sequencing of cytosine methylation

di Lister, Ryan, Ecker, Joseph R.
Pubblicazione 2009

Turning over DNA methylation in the mind

di Lister, Ryan, Mukamel, Eran A.
Pubblicato in Front Neurosci (2015)

The Mitochondrial Protein Import Machinery of Plants (MPIMP) database

di Lister, Ryan, Murcha, Monika W., Whelan, James
Pubblicazione 2003

Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family

di de Mendoza, Alex, Pflueger, Jahnvi, Lister, Ryan
Pubblicato in Genome Res (2019)

Next is now: new technologies for sequencing of genomes, transcriptomes and beyond

di Lister, Ryan, Gregory, Brian D., Ecker, Joseph R.
Pubblicazione 2009

Identification, Expression, and Import of Components 17 and 23 of the Inner Mitochondrial Membrane Translocase from Arabidopsis

di Murcha, Monika W., Lister, Ryan, Ho, Angela Y. Y., Whelan, James
Pubblicazione 2003

DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity

di Eichten, Steven R., Stuart, Tim, Srivastava, Akanksha, Lister, Ryan, Borevitz, Justin O.
Pubblicato in Genome Res (2016)

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions

di Srivastava, Akanksha, Karpievitch, Yuliya V., Eichten, Steven R., Borevitz, Justin O., Lister, Ryan
Pubblicato in BMC Bioinformatics (2019)

Analysis of an artificial zinc finger epigenetic modulator: widespread binding but limited regulation

di Grimmer, Matthew R., Stolzenburg, Sabine, Ford, Ethan, Lister, Ryan, Blancafort, Pilar, Farnham, Peggy J.
Pubblicazione 2014

MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing

di Urich, Mark A, Nery, Joseph R, Lister, Ryan, Schmitz, Robert J, Ecker, Joseph R
Pubblicato in Nat Protoc (2015)

Retention of paternal DNA methylome in the developing zebrafish germline

di Skvortsova, Ksenia, Tarbashevich, Katsiaryna, Stehling, Martin, Lister, Ryan, Irimia, Manuel, Raz, Erez, Bogdanovic, Ozren
Pubblicato in Nat Commun (2019)

Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

di Stuart, Tim, Eichten, Steven R, Cahn, Jonathan, Karpievitch, Yuliya V, Borevitz, Justin O, Lister, Ryan
Pubblicato in eLife (2016)

Depletion of Foxk transcription factors causes genome-wide transcriptional misregulation and developmental arrest in zebrafish embryos

di Geng, Fan-Suo, de la Calle-Mustienes, Elisa, Gómez-Skarmeta, José Luis, Lister, Ryan, Bogdanovic, Ozren
Pubblicato in MicroPubl Biol (2020)

Epigenomic landscapes of hESC-derived neural rosettes: modeling neural tube formation and diseases

di Valensisi, Cristina, Andrus, Colin, Buckberry, Sam, Jayavelu, Naresh Doni, Lund, Riikka J., Lister, Ryan, Hawkins, R. David
Pubblicato in Cell Rep (2017)

Functional Definition of Outer Membrane Proteins Involved in Preprotein Import into Mitochondria

di Lister, Ryan, Carrie, Chris, Duncan, Owen, Ho, Lois H.M., Howell, Katharine A., Murcha, Monika W., Whelan, James
Pubblicazione 2007

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

di Kishore, Kamal, de Pretis, Stefano, Lister, Ryan, Morelli, Marco J., Bianchi, Valerio, Amati, Bruno, Ecker, Joseph R., Pelizzola, Mattia
Pubblicato in BMC Bioinformatics (2015)

Embryonic transcription is controlled by maternally defined chromatin state

di Hontelez, Saartje, van Kruijsbergen, Ila, Georgiou, Georgios, van Heeringen, Simon J., Bogdanovic, Ozren, Lister, Ryan, Veenstra, Gert Jan C.
Pubblicato in Nat Commun (2015)

Erratum: Embryonic transcription is controlled by maternally defined chromatin state

di Hontelez, Saartje, van Kruijsbergen, Ila, Georgiou, Georgios, van Heeringen, Simon J., Bogdanovic, Ozren, Lister, Ryan, Veenstra, Gert Jan C.
Pubblicato in Nat Commun (2016)

A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs

di Pflueger, Christian, Tan, Dennis, Swain, Tessa, Nguyen, Trung, Pflueger, Jahnvi, Nefzger, Christian, Polo, Jose M., Ford, Ethan, Lister, Ryan
Pubblicato in Genome Res (2018)

A Transcriptomic and Proteomic Characterization of the Arabidopsis Mitochondrial Protein Import Apparatus and Its Response to Mitochondrial Dysfunction

di Lister, Ryan, Chew, Orinda, Lee, May-Nee, Heazlewood, Joshua L., Clifton, Rachel, Parker, Karen L., Millar, A. Harvey, Whelan, James
Pubblicazione 2004