Ontology-based annotations and semantic relations in large-scale (epi)genomics data

Por Galeota, Eugenia, Pelizzola, Mattia
Publicado no Brief Bioinform (2017)

The DNA methylome

Por Pelizzola, Mattia, Ecker, Joseph R.
Publicado em 2010

Computational and experimental methods to decipher the epigenetic code

Por de Pretis, Stefano, Pelizzola, Mattia
Publicado em 2014

Computational epigenomics: challenges and opportunities

Por Robinson, Mark D., Pelizzola, Mattia
Publicado no Front Genet (2015)

Ontology-driven integrative analysis of omics data through Onassis

Por Galeota, Eugenia, Kishore, Kamal, Pelizzola, Mattia
Publicado no Sci Rep (2020)

INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species

Por de Pretis, Stefano, Furlan, Mattia, Pelizzola, Mattia
Publicado no Front Genet (2020)

AMDA: an R package for the automated microarray data analysis

Por Pelizzola, Mattia, Pavelka, Norman, Foti, Maria, Ricciardi-Castagnoli, Paola
Publicado em 2006

m6A-Dependent RNA Dynamics in T Cell Differentiation

Por Furlan, Mattia, Galeota, Eugenia, de Pretis, Stefano, Caselle, Michele, Pelizzola, Mattia
Publicado no Genes (Basel) (2019)

Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts

Por Furlan, Mattia, Tanaka, Iris, Leonardi, Tommaso, de Pretis, Stefano, Pelizzola, Mattia
Publicado no Front Genet (2020)

A power law global error model for the identification of differentially expressed genes in microarray data

Por Pavelka, Norman, Pelizzola, Mattia, Vizzardelli, Caterina, Capozzoli, Monica, Splendiani, Andrea, Granucci, Francesca, Ricciardi-Castagnoli, Paola
Publicado em 2004

Selective transcriptional regulation by Myc: Experimental design and computational analysis of high-throughput sequencing data

Por Pelizzola, Mattia, Morelli, Marco J., Sabò, Arianna, Kress, Theresia R., de Pretis, Stefano, Amati, Bruno
Publicado no Data Brief (2015)

MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment

Por Pelizzola, Mattia, Koga, Yasuo, Urban, Alexander Eckehart, Krauthammer, Michael, Weissman, Sherman, Halaban, Ruth, Molinaro, Annette M.
Publicado em 2008

DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes

Por Melloni, Giorgio EM, Ogier, Alessandro GE, de Pretis, Stefano, Mazzarella, Luca, Pelizzola, Mattia, Pelicci, Pier Giuseppe, Riva, Laura
Publicado em 2014

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

Por Kishore, Kamal, de Pretis, Stefano, Lister, Ryan, Morelli, Marco J., Bianchi, Valerio, Amati, Bruno, Ecker, Joseph R., Pelizzola, Mattia
Publicado no BMC Bioinformatics (2015)

LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer

Por Melloni, Giorgio E. M., de Pretis, Stefano, Riva, Laura, Pelizzola, Mattia, Céol, Arnaud, Costanza, Jole, Müller, Heiko, Zammataro, Luca
Publicado no BMC Bioinformatics (2016)

The Genopolis Microarray Database

Por Splendiani, Andrea, Brandizi, Marco, Even, Gael, Beretta, Ottavio, Pavelka, Norman, Pelizzola, Mattia, Mayhaus, Manuel, Foti, Maria, Mauri, Giancarlo, Ricciardi-Castagnoli, Paola
Publicado em 2007

Genome-wide screen of promoter methylation identifies novel markers in melanoma

Por Koga, Yasuo, Pelizzola, Mattia, Cheng, Elaine, Krauthammer, Michael, Sznol, Mario, Ariyan, Stephan, Narayan, Deepak, Molinaro, Annette M., Halaban, Ruth, Weissman, Sherman M.
Publicado em 2009

Widespread dynamic DNA methylation in response to biotic stress

Por Dowen, Robert H., Pelizzola, Mattia, Schmitz, Robert J., Lister, Ryan, Dowen, Jill M., Nery, Joseph R., Dixon, Jack E., Ecker, Joseph R.
Publicado em 2012

Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation

Por de Pretis, Stefano, Kress, Theresia R., Morelli, Marco J., Sabò, Arianna, Locarno, Chiara, Verrecchia, Alessandro, Doni, Mirko, Campaner, Stefano, Amati, Bruno, Pelizzola, Mattia
Publicado no Genome Res (2017)

m(6)A RNA modification and its writer/reader VIRMA/YTHDF3 in testicular germ cell tumors: a role in seminoma phenotype maintenance

Por Lobo, João, Costa, Ana Laura, Cantante, Mariana, Guimarães, Rita, Lopes, Paula, Antunes, Luís, Braga, Isaac, Oliveira, Jorge, Pelizzola, Mattia, Henrique, Rui, Jerónimo, Carmen
Publicado no J Transl Med (2019)