mGrid: A load-balanced distributed computing environment for the remote execution of the user-defined Matlab code

Por Karpievitch, Yuliya V, Almeida, Jonas S
Publicado em 2006

Normalization and missing value imputation for label-free LC-MS analysis

Por Karpievitch, Yuliya V, Dabney, Alan R, Smith, Richard D
Publicado em 2012

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions

Por Srivastava, Akanksha, Karpievitch, Yuliya V., Eichten, Steven R., Borevitz, Justin O., Lister, Ryan
Publicado no BMC Bioinformatics (2019)

An Introspective Comparison of Random Forest-Based Classifiers for the Analysis of Cluster-Correlated Data by Way of RF++

Por Karpievitch, Yuliya V., Hill, Elizabeth G., Leclerc, Anthony P., Dabney, Alan R., Almeida, Jonas S.
Publicado em 2009

Metabolomics Data Normalization with EigenMS

Por Karpievitch, Yuliya V., Nikolic, Sonja B., Wilson, Richard, Sharman, James E., Edwards, Lindsay M.
Publicado no PLoS One (2014)

Liquid Chromatography Mass Spectrometry-Based Proteomics: Biological and Technological Aspects

Por Karpievitch, Yuliya V., Polpitiya, Ashoka D., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Publicado em 2010

Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation

Por Stuart, Tim, Eichten, Steven R, Cahn, Jonathan, Karpievitch, Yuliya V, Borevitz, Justin O, Lister, Ryan
Publicado no eLife (2016)

PrepMS: TOF MS Data Graphical Preprocessing Tool

Por Karpievitch, Yuliya V., Hill, Elizabeth G., Smolka, Adam J., Morris, Jeffrey S., Coombes, Kevin R., Baggerly, Keith A., Almeida, Jonas S.
Publicado em 2006

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

Por Karpievitch, Yuliya V., Taverner, Thomas, Adkins, Joshua N., Callister, Stephen J., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Publicado em 2009

DanteR: an extensible R-based tool for quantitative analysis of -omics data

Por Taverner, Tom, Karpievitch, Yuliya V., Polpitiya, Ashoka D., Brown, Joseph N., Dabney, Alan R., Anderson, Gordon A., Smith, Richard D.
Publicado em 2012

Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

Por Narsai, Reena, Gouil, Quentin, Secco, David, Srivastava, Akanksha, Karpievitch, Yuliya V., Liew, Lim Chee, Lister, Ryan, Lewsey, Mathew G., Whelan, James
Publicado no Genome Biol (2017)

A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics

Por Stanley, Jeffrey R., Adkins, Joshua N., Slysz, Gordon W., Monroe, Matthew E., Purvine, Samuel O., Karpievitch, Yuliya V., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Publicado em 2011

Label-Free Quantitative LC-MS Proteomics of Alzheimer’s Disease and Normally Aged Human Brains

Por Andreev, Victor P., Petyuk, Vladislav A., Brewer, Heather M., Karpievitch, Yuliya V., Xie, Fang, Clarke, Jennifer, Camp, David, Smith, Richard D., Lieberman, Andrew P., Albin, Roger L., Nawaz, Zafar, El Hokayem, Jimmy, Myers, Amanda J.
Publicado em 2012

Aberrant cell migration contributes to defective airway epithelial repair in childhood wheeze

Por Iosifidis, Thomas, Sutanto, Erika N., Buckley, Alysia G., Coleman, Laura, Gill, Erin E., Lee, Amy H., Ling, Kak-Ming, Hillas, Jessica, Looi, Kevin, Garratt, Luke W., Martinovich, Kelly M., Shaw, Nicole C., Montgomery, Samuel T., Kicic-Starcevich, Elizabeth, Karpievitch, Yuliya V., Le Souëf, Peter, Laing, Ingrid A., Vijayasekaran, Shyan, Lannigan, Francis J., Rigby, Paul J., Hancock, Robert E.W., Knight, Darryl A., Stick, Stephen M., Kicic., Anthony
Publicado no JCI Insight (2020)