Relating perturbation magnitude to temporal gene expression in biological systems

Por Callister, Stephen J, Parnell, J Jacob, Pfrender, Michael E, Hashsham, Syed A
Publicado em 2009

Correspondence between Community Structure and Function during Succession in Phenol- and Phenol-plus-Trichloroethene-Fed Sequencing Batch Reactors

Por Ayala-del-Río, Héctor L., Callister, Stephen J., Criddle, Craig S., Tiedje, James M.
Publicado em 2004

An Empirical Strategy for Characterizing Bacterial Proteomes across Species in the Absence of Genomic Sequences

Por Turse, Joshua E., Marshall, Matthew J., Fredrickson, James K., Lipton, Mary S., Callister, Stephen J.
Publicado em 2010

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes

Por Curtis, Darren S., Phillips, Aaron R., Callister, Stephen J., Conlan, Sean, McCue, Lee Ann
Publicado em 2013

Role of the Global Transcriptional Regulator PrrA in Rhodobacter sphaeroides 2.4.1: Combined Transcriptome and Proteome Analysis

Por Eraso, Jesus M., Roh, Jung Hyeob, Zeng, Xiaohua, Callister, Stephen J., Lipton, Mary S., Kaplan, Samuel
Publicado em 2008

Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium

Por Otwell, Anne E., Callister, Stephen J., Zink, Erika M., Smith, Richard D., Richardson, Ruth E.
Publicado no Front Microbiol (2016)

Proteomic Characterization of the Rhodobacter sphaeroides 2.4.1 Photosynthetic Membrane: Identification of New Proteins

Por Zeng, Xiaohua, Roh, Jung Hyeob, Callister, Stephen J., Tavano, Christine L., Donohue, Timothy J., Lipton, Mary S., Kaplan, Samuel
Publicado em 2007

The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery

Por Metz, Thomas O., Zhang, Qibin, Page, Jason S., Shen, Yufeng, Callister, Stephen J., Jacobs, Jon M., Smith, Richard D.
Publicado em 2007

Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock

Por Parnell, J. Jacob, Callister, Stephen J., Rompato, Giovanni, Nicora, Carrie D., Paša-Tolić, Ljiljana, Williamson, Ashley, Pfrender, Michael E.
Publicado em 2011

Molecular dissection of a putative iron reductase from Desulfotomaculum reducens MI-1

Por Li, Zhi, Kim, David D., Nelson, Ornella D., Otwell, Anne E., Richardson, Ruth E., Callister, Stephen J., Lin, Hening
Publicado no Biochem Biophys Res Commun (2015)

Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85

Por Burnet, Meagan C., Dohnalkova, Alice C., Neumann, Anthony P., Lipton, Mary S., Smith, Richard D., Suen, Garret, Callister, Stephen J.
Publicado no PLoS One (2015)

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

Por Karpievitch, Yuliya V., Taverner, Thomas, Adkins, Joshua N., Callister, Stephen J., Anderson, Gordon A., Smith, Richard D., Dabney, Alan R.
Publicado em 2009

Loss of the Response Regulator CtrA Causes Pleiotropic Effects on Gene Expression but Does Not Affect Growth Phase Regulation in Rhodobacter capsulatus

Por Mercer, Ryan G., Callister, Stephen J., Lipton, Mary S., Pasa-Tolic, Ljiljana, Strnad, Hynek, Paces, Vaclav, Beatty, J. Thomas, Lang, Andrew S.
Publicado em 2010

Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides

Por Peña-Castillo, Lourdes, Mercer, Ryan G, Gurinovich, Anastasia, Callister, Stephen J, Wright, Aaron T, Westbye, Alexander B, Beatty, J Thomas, Lang, Andrew S
Publicado em 2014

Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI)

Por Wilkins, Michael J., Callister, Stephen J., Miletto, Marzia, Williams, Kenneth H., Nicora, Carrie D., Lovley, Derek R., Long, Philip E., Lipton, Mary S.
Publicado em 2011

Normalization Approaches for Removing Systematic Biases Associated with Mass Spectrometry and Label-Free Proteomics

Por Callister, Stephen J., Barry, Richard C., Adkins, Joshua N., Johnson, Ethan T., Qian, Weijun, Webb-Robertson, Bobbie-Jo M., Smith, Richard D., Lipton, Mary S.
Publicado em 2006

Proteomic Analysis of Stationary Phase in the Marine Bacterium “Candidatus Pelagibacter ubique”

Por Sowell, Sarah M., Norbeck, Angela D., Lipton, Mary S., Nicora, Carrie D., Callister, Stephen J., Smith, Richard D., Barofsky, Douglas F., Giovannoni, Stephen J.
Publicado em 2008

Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Por Callister, Stephen J., McCue, Lee Ann, Turse, Joshua E., Monroe, Matthew E., Auberry, Kenneth J., Smith, Richard D., Adkins, Joshua N., Lipton, Mary S.
Publicado em 2008

Application of the Accurate Mass and Time Tag Approach to the Proteome Analysis of Sub-cellular Fractions Obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and Photosynthetic Ce...

Por Callister, Stephen J., Dominguez, Miguel A., Nicora, Carrie D., Zeng, Xiaohua, Tavano, Christine L., Kaplan, Samuel, Donohue, Timothy J., Smith, Richard D., Lipton, Mary S.
Publicado em 2006

Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome

Por Burnum, Kristin E, Callister, Stephen J, Nicora, Carrie D, Purvine, Samuel O, Hugenholtz, Philip, Warnecke, Falk, Scheffrahn, Rudolf H, Smith, Richard D, Lipton, Mary S
Publicado em 2011