JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

بواسطة Butterfield, Yaron S., Kreitzman, Maayan, Thiessen, Nina, Corbett, Richard D., Li, Yisu, Pang, Johnson, Ma, Yussanne P., Jones, Steven J. M., Birol, İnanç
منشور في 2014

Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA

بواسطة Haile, Simon, Corbett, Richard D., Bilobram, Steve, Mungall, Karen, Grande, Bruno M., Kirk, Heather, Pandoh, Pawan, MacLeod, Tina, McDonald, Helen, Bala, Miruna, Coope, Robin J., Moore, Richard A., Mungall, Andrew J., Zhao, Yongjun, Morin, Ryan D., Jones, Steven J., Marra, Marco A.
الحاوية / القاعدة PLoS One (2019)

Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing

بواسطة Haile, Simon, Corbett, Richard D., MacLeod, Tina, Bilobram, Steve, Smailus, Duane, Tsao, Philip, Kirk, Heather, McDonald, Helen, Pandoh, Pawan, Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Schein, Jacquie, Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
الحاوية / القاعدة BMC Genomics (2017)

Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples

بواسطة Haile, Simon, Corbett, Richard D, Bilobram, Steve, Bye, Morgan H, Kirk, Heather, Pandoh, Pawan, Trinh, Eva, MacLeod, Tina, McDonald, Helen, Bala, Miruna, Miller, Diane, Novik, Karen, Coope, Robin J, Moore, Richard A, Zhao, Yongjun, Mungall, Andrew J, Ma, Yussanne, Holt, Rob A, Jones, Steven J, Marra, Marco A
الحاوية / القاعدة Nucleic Acids Res (2019)

Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis

بواسطة Haile, Simon, Pandoh, Pawan, McDonald, Helen, Corbett, Richard D., Tsao, Philip, Kirk, Heather, MacLeod, Tina, Jones, Martin, Bilobram, Steve, Brooks, Denise, Smailus, Duane, Steidl, Christian, Scott, David W., Bala, Miruna, Hirst, Martin, Miller, Diane, Moore, Richard A., Mungall, Andrew J., Coope, Robin J., Ma, Yussanne, Zhao, Yongjun, Holt, Rob A., Jones, Steven J., Marra, Marco A.
الحاوية / القاعدة PLoS One (2017)

A Distributed Whole Genome Sequencing Benchmark Study

بواسطة Corbett, Richard D., Eveleigh, Robert, Whitney, Joe, Barai, Namrata, Bourgey, Mathieu, Chuah, Eric, Johnson, Joanne, Moore, Richard A., Moradin, Neda, Mungall, Karen L., Pereira, Sergio, Reuter, Miriam S., Thiruvahindrapuram, Bhooma, Wintle, Richard F., Ragoussis, Jiannis, Strug, Lisa J., Herbrick, Jo-Anne, Aziz, Naveed, Jones, Steven J. M., Lathrop, Mark, Scherer, Stephen W., Staffa, Alfredo, Mungall, Andrew J.
الحاوية / القاعدة Front Genet (2020)

A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells

بواسطة Haile, Simon, Corbett, Richard D., LeBlanc, Veronique G., Wei, Lisa, Pleasance, Stephen, Bilobram, Steve, Nip, Ka Ming, Brown, Kirstin, Trinh, Eva, Smith, Jillian, Trinh, Diane L., Bala, Miruna, Chuah, Eric, Coope, Robin J. N., Moore, Richard A., Mungall, Andrew J., Mungall, Karen L., Zhao, Yongjun, Hirst, Martin, Aparicio, Samuel, Birol, Inanc, Jones, Steven J. M., Marra, Marco A.
الحاوية / القاعدة Front Genet (2021)

Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies

بواسطة Swanson, Lucas, Robertson, Gordon, Mungall, Karen L, Butterfield, Yaron S, Chiu, Readman, Corbett, Richard D, Docking, T Roderick, Hogge, Donna, Jackman, Shaun D, Moore, Richard A, Mungall, Andrew J, Nip, Ka Ming, Parker, Jeremy DK, Qian, Jenny Qing, Raymond, Anthony, Sung, Sandy, Tam, Angela, Thiessen, Nina, Varhol, Richard, Wang, Sherry, Yorukoglu, Deniz, Zhao, YongJun, Hoodless, Pamela A, Sahinalp, S Cenk, Karsan, Aly, Birol, Inanc
منشور في 2013

Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing

بواسطة Morin, Ryan D., Mungall, Karen, Pleasance, Erin, Mungall, Andrew J., Goya, Rodrigo, Huff, Ryan D., Scott, David W., Ding, Jiarui, Roth, Andrew, Chiu, Readman, Corbett, Richard D., Chan, Fong Chun, Mendez-Lago, Maria, Trinh, Diane L., Bolger-Munro, Madison, Taylor, Greg, Hadj Khodabakhshi, Alireza, Ben-Neriah, Susana, Pon, Julia, Meissner, Barbara, Woolcock, Bruce, Farnoud, Noushin, Rogic, Sanja, Lim, Emilia L., Johnson, Nathalie A., Shah, Sohrab, Jones, Steven, Steidl, Christian, Holt, Robert, Birol, Inanc, Moore, Richard, Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A.
منشور في 2013

The genetic landscape of high-risk neuroblastoma

بواسطة Pugh, Trevor J., Morozova, Olena, Attiyeh, Edward F., Asgharzadeh, Shahab, Wei, Jun S., Auclair, Daniel, Carter, Scott L., Cibulskis, Kristian, Hanna, Megan, Kiezun, Adam, Kim, Jaegil, Lawrence, Michael S., Lichenstein, Lee, McKenna, Aaron, Pedamallu, Chandra Sekhar, Ramos, Alex H., Shefler, Erica, Sivachenko, Andrey, Sougnez, Carrie, Stewart, Chip, Ally, Adrian, Birol, Inanc, Chiu, Readman, Corbett, Richard D., Hirst, Martin, Jackman, Shaun D., Kamoh, Baljit, Khodabakshi, Alireza Hadj, Krzywinski, Martin, Lo, Allan, Moore, Richard A., Mungall, Karen L., Qian, Jenny, Tam, Angela, Thiessen, Nina, Zhao, Yongjun, Cole, Kristina A., Diamond, Maura, Diskin, Sharon J., Mosse, Yael P., Wood, Andrew C., Ji, Lingyun, Sposto, Richard, Badgett, Thomas, London, Wendy B., Moyer, Yvonne, Gastier-Foster, Julie M., Smith, Malcolm A., Auvil, Jaime M. Guidry, Gerhard, Daniela S., Hogarty, Michael D., Jones, Steven J. M., Lander, Eric S., Gabriel, Stacey B., Getz, Gad, Seeger, Robert C., Khan, Javed, Marra, Marco A., Meyerson, Matthew, Maris, John M.
منشور في 2013

Spatial heterogeneity in medulloblastoma

بواسطة Morrissy, A Sorana, Cavalli, Florence MG, Remke, Marc, Ramaswamy, Vijay, Shih, David JH, Holgado, Borja L, Farooq, Hamza, Donovan, Laura K, Garzia, Livia, Agnihotri, Sameer, Kiehna, Erin N, Mercier, Eloi, Mayoh, Chelsea, Papillon-Cavanagh, Simon, Nikbakht, Hamid, Gayden, Tenzin, Torchia, Jonathon, Picard, Daniel, Merino, Diana M, Luu, Betty, Wu, Xiaochong, Horswell, Stuart, Thompson, Yuan Yao, Hovestadt, Volker, Northcott, Paul A, Jones, David TW, Peacock, John, Wang, Xin, Mack, Stephen C, Reimand, Juri, Albrecht, Steffen, Fontebasso, Adam M, Thiessen, Nina, Li, Yisu, Schein, Jacqueline E, Lee, Darlene, Carlsen, Rebecca, Mayo, Michael, Tse, Kane, Tam, Angela, Dhalla, Noreen, Ally, Adrian, Chuah, Eric, Cheng, Young, Plettner, Patrick, Li, Haiyan I, Corbett, Richard D, Wong, Tina, Long, William, Loukides, James, Buczkowicz, Pawel, Hawkins, Cynthia E, Tabori, Uri, Rood, Brian R, Myseros, John S, Packer, Roger J, Korshunov, Andrey, Lichter, Peter, Kool, Marcel, Pfister, Stefan M, Schüller, Ulrich, Dirks, Peter, Huang, Annie, Bouffet, Eric, Rutka, James T, Bader, Gary D, Swanton, Charles, Ma, Yusanne, Moore, Richard A, Mungall, Andrew J, Majewski, Jacek, Jones, Steven JM, Das, Sunit, Malkin, David, Jabado, Nada, Marra, Marco A, Taylor, Michael D
الحاوية / القاعدة Nat Genet (2017)

Subgroup specific structural variation across 1,000 medulloblastoma genomes

بواسطة Northcott, Paul A, Shih, David JH, Peacock, John, Garzia, Livia, Morrissy, Sorana, Zichner, Thomas, Stütz, Adrian M, Korshunov, Andrey, Reimand, Juri, Schumacher, Steven E, Beroukhim, Rameen, Ellison, David W, Marshall, Christian R, Lionel, Anath C, Mack, Stephen, Dubuc, Adrian, Yao, Yuan, Ramaswamy, Vijay, Luu, Betty, Rolider, Adi, Cavalli, Florence, Wang, Xin, Remke, Marc, Wu, Xiaochong, Chiu, Readman YB, Chu, Andy, Chuah, Eric, Corbett, Richard D, Hoad, Gemma R, Jackman, Shaun D, Li, Yisu, Lo, Allan, Mungall, Karen L, Nip, Ka Ming, Qian, Jenny Q, Raymond, Anthony GJ, Thiessen, Nina, Varhol, Richard J, Birol, Inanc, Moore, Richard A, Mungall, Andrew J, Holt, Robert, Kawauchi, Daisuke, Roussel, Martine F, Kool, Marcel, Jones, David TW, Witt, Hendrick, Fernandez-L, Africa, Kenney, Anna M, Wechsler-Reya, Robert J, Dirks, Peter, Aviv, Tzvi, Grajkowska, Wieslawa A, Perek-Polnik, Marta, Haberler, Christine C, Delattre, Olivier, Reynaud, Stéphanie S, Doz, François F, Pernet-Fattet, Sarah S, Cho, Byung-Kyu, Kim, Seung-Ki, Wang, Kyu-Chang, Scheurlen, Wolfram, Eberhart, Charles G, Fèvre-Montange, Michelle, Jouvet, Anne, Pollack, Ian F, Fan, Xing, Muraszko, Karin M, Gillespie, G. Yancey, Di Rocco, Concezio, Massimi, Luca, Michiels, Erna MC, Kloosterhof, Nanne K, French, Pim J, Kros, Johan M, Olson, James M, Ellenbogen, Richard G, Zitterbart, Karel, Kren, Leos, Thompson, Reid C, Cooper, Michael K, Lach, Boleslaw, McLendon, Roger E, Bigner, Darell D, Fontebasso, Adam, Albrecht, Steffen, Jabado, Nada, Lindsey, Janet C, Bailey, Simon, Gupta, Nalin, Weiss, William A, Bognár, László, Klekner, Almos, Van Meter, Timothy E, Kumabe, Toshihiro, Tominaga, Teiji, Elbabaa, Samer K, Leonard, Jeffrey R, Rubin, Joshua B, Liau, Linda M, Van Meir, Erwin G, Fouladi, Maryam, Nakamura, Hideo, Cinalli, Giuseppe, Garami, Miklós, Hauser, Peter, Saad, Ali G, Iolascon, Achille, Jung, Shin, Carlotti, Carlos G, Vibhakar, Rajeev, Ra, Young Shin, Robinson, Shenandoah, Zollo, Massimo, Faria, Claudia C, Chan, Jennifer A, Levy, Michael L, Sorensen, Poul HB, Meyerson, Matthew, Pomeroy, Scott L, Cho, Yoon-Jae, Bader, Gary D, Tabori, Uri, Hawkins, Cynthia E, Bouffet, Eric, Scherer, Stephen W, Rutka, James T, Malkin, David, Clifford, Steven C, Jones, Steven JM, Korbel, Jan O, Pfister, Stefan M, Marra, Marco A, Taylor, Michael D
منشور في 2012

Divergent clonal selection dominates medulloblastoma at recurrence

بواسطة Morrissy, A. Sorana, Garzia, Livia, Shih, David J. H., Zuyderduyn, Scott, Huang, Xi, Skowron, Patryk, Remke, Marc, Cavalli, Florence M. G., Ramaswamy, Vijay, Lindsay, Patricia E., Jelveh, Salomeh, Donovan, Laura K., Wang, Xin, Luu, Betty, Zayne, Kory, Li, Yisu, Mayoh, Chelsea, Thiessen, Nina, Mercier, Eloi, Mungall, Karen L., Ma, Yusanne, Tse, Kane, Zeng, Thomas, Shumansky, Karey, Roth, Andrew J. L., Shah, Sohrab, Farooq, Hamza, Kijima, Noriyuki, Holgado, Borja L., Lee, John J. Y., Matan-Lithwick, Stuart, Liu, Jessica, Mack, Stephen C., Manno, Alex, Michealraj, K. A., Nor, Carolina, Peacock, John, Qin, Lei, Reimand, Juri, Rolider, Adi, Thompson, Yuan Y., Wu, Xiaochong, Pugh, Trevor, Ally, Adrian, Bilenky, Mikhail, Butterfield, Yaron S. N., Carlsen, Rebecca, Cheng, Young, Chuah, Eric, Corbett, Richard D., Dhalla, Noreen, He, An, Lee, Darlene, Li, Haiyan I., Long, William, Mayo, Michael, Plettner, Patrick, Qian, Jenny Q., Schein, Jacqueline E., Tam, Angela, Wong, Tina, Birol, Inanc, Zhao, Yongjun, Faria, Claudia C., Pimentel, José, Nunes, Sofia, Shalaby, Tarek, Grotzer, Michael, Pollack, Ian F., Hamilton, Ronald L., Li, Xiao-Nan, Bendel, Anne E., Fults, Daniel W., Walter, Andrew W., Kumabe, Toshihiro, Tominaga, Teiji, Collins, V. Peter, Cho, Yoon-Jae, Hoffman, Caitlin, Lyden, David, Wisoff, Jeffrey H., Garvin, James H., Stearns, Duncan S., Massimi, Luca, Schüller, Ulrich, Sterba, Jaroslav, Zitterbart, Karel, Puget, Stephanie, Ayrault, Olivier, Dunn, Sandra E., Tirapelli, Daniela P. C., Carlotti, Carlos G., Wheeler, Helen, Hallahan, Andrew R., Ingram, Wendy, MacDonald, Tobey J., Olson, Jeffrey J., Van Meir, Erwin G., Lee, Ji-Yeoun, Wang, Kyu-Chang, Kim, Seung-Ki, Cho, Byung-Kyu, Pietsch, Torsten, Fleischhack, Gudrun, Tippelt, Stephan, Ra, Young Shin, Bailey, Simon, Lindsey, Janet C., Clifford, Steven C., Eberhart, Charles G., Cooper, Michael K., Packer, Roger J., Massimino, Maura, Garre, Maria Luisa, Bartels, Ute, Tabori, Uri, Hawkins, Cynthia E., Dirks, Peter, Bouffet, Eric, Rutka, James T., Wechsler-Reya, Robert J., Weiss, William A., Collier, Lara S., Dupuy, Adam J., Korshunov, Andrey, Jones, David T. W., Kool, Marcel, Northcott, Paul A., Pfister, Stefan M., Largaespada, David A., Mungall, Andrew J., Moore, Richard A., Jabado, Nada, Bader, Gary D., Jones, Steven J. M., Malkin, David, Marra, Marco A., Taylor, Michael D.
الحاوية / القاعدة Nature (2016)