Co-expression networks identify distinct immune infiltrates in hepatocellular carcinoma

Por Chiang, Derek Y, Huang, Alan
Publicado no J Immunother Cancer (2015)

Integrating Prior Knowledge in Multiple Testing under Dependence with Applications to Detecting Differential DNA Methylation

Por Kuan, Pei Fen, Chiang, Derek Y.
Publicado em 2012

Determining Physical Constraints in Transcriptional Initiation Complexes Using DNA Sequence Analysis

Por Shultzaberger, Ryan K., Chiang, Derek Y., Moses, Alan M., Eisen, Michael B.
Publicado em 2007

Phylogenetically and spatially conserved word pairs associated with gene-expression changes in yeasts

Por Chiang, Derek Y, Moses, Alan M, Kellis, Manolis, Lander, Eric S, Eisen, Michael B
Publicado em 2003

Position specific variation in the rate of evolution in transcription factor binding sites

Por Moses, Alan M, Chiang, Derek Y, Kellis, Manolis, Lander, Eric S, Eisen, Michael B
Publicado em 2003

Cancer Gene Discovery in Hepatocellular Carcinoma

Por Zender, Lars, Villanueva, Augusto, Tovar, Victoria, Sia, Daniela, Chiang, Derek Y., Llovet, Josep M.
Publicado em 2010

A probabilistic framework for aligning paired-end RNA-seq data

Por Hu, Yin, Wang, Kai, He, Xiaping, Chiang, Derek Y., Prins, Jan F., Liu, Jinze
Publicado em 2010

MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

Por Moses, Alan M, Chiang, Derek Y, Pollard, Daniel A, Iyer, Venky N, Eisen, Michael B
Publicado em 2004

Flexible promoter architecture requirements for coactivator recruitment

Por Chiang, Derek Y, Nix, David A, Shultzaberger, Ryan K, Gasch, Audrey P, Eisen, Michael B
Publicado em 2006

Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi

Por Gasch, Audrey P, Moses, Alan M, Chiang, Derek Y, Fraser, Hunter B, Berardini, Mark, Eisen, Michael B
Publicado em 2004

PureCN: copy number calling and SNV classification using targeted short read sequencing

Por Riester, Markus, Singh, Angad P., Brannon, A. Rose, Yu, Kun, Campbell, Catarina D., Chiang, Derek Y., Morrissey, Michael P.
Publicado no Source Code Biol Med (2016)

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data

Por Singh, Darshan, Orellana, Christian F., Hu, Yin, Jones, Corbin D., Liu, Yufeng, Chiang, Derek Y., Liu, Jinze, Prins, Jan F.
Publicado em 2011

A Robust Method for Transcript Quantification with RNA-Seq Data

Por Huang, Yan, Hu, Yin, Jones, Corbin D., MacLeod, James N., Chiang, Derek Y., Liu, Yufeng, Prins, Jan F., Liu, Jinze
Publicado em 2013

High-resolution mapping of copy-number alterations with massively parallel sequencing

Por Chiang, Derek Y., Getz, Gad, Jaffe, David B., O’Kelly, Michael J. T., Zhao, Xiaojun, Carter, Scott L., Russ, Carsten, Nusbaum, Chad, Meyerson, Matthew, Lander, Eric S.
Publicado em 2008

iReckon: Simultaneous isoform discovery and abundance estimation from RNA-seq data

Por Mezlini, Aziz M., Smith, Eric J.M., Fiume, Marc, Buske, Orion, Savich, Gleb L., Shah, Sohrab, Aparicio, Sam, Chiang, Derek Y., Goldenberg, Anna, Brudno, Michael
Publicado em 2013

Von Hippel-Lindau status influences phenotype of liver cancers arising from PTEN loss

Por Sendor, Adam B, Hacker, Kathryn E, Chen, Shufen, Corona, Armando L, Sen, Oishee, Chiang, Derek Y, Snavely, Anna, Rogers, Arlin B, Montgomery, Stephanie A, Rathmell, W Kimryn, McRee, Autumn J
Publicado no Gastrointest Cancer (2015)

Astrocyte elevated gene-1 regulates hepatocellular carcinoma development and progression

Por Yoo, Byoung Kwon, Emdad, Luni, Su, Zao-zhong, Villanueva, Augusto, Chiang, Derek Y., Mukhopadhyay, Nitai D., Mills, Alan Scott, Waxman, Samuel, Fisher, Robert A., Llovet, Josep M., Fisher, Paul B., Sarkar, Devanand
Publicado em 2009

IGF ACTIVATION IN A MOLECULAR SUBCLASS OF HEPATOCELLULAR CARCINOMA AND PRE-CLINICAL EFFICACY OF IGF-1R BLOCKAGE

Por Tovar, Victoria, Alsinet, Clara, Villanueva, Augusto, Hoshida, Yujin, Chiang, Derek Y., Solé, Manel, Thung, Swan, Moyano, Susana, Toffanin, Sara, Mínguez, Beatriz, Cabellos, Laia, Peix, Judit, Schwartz, Myron, Mazzaferro, Vincenzo, Bruix, Jordi, Llovet, Josep M.
Publicado em 2010

MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery

Por Wang, Kai, Singh, Darshan, Zeng, Zheng, Coleman, Stephen J., Huang, Yan, Savich, Gleb L., He, Xiaping, Mieczkowski, Piotr, Grimm, Sara A., Perou, Charles M., MacLeod, James N., Chiang, Derek Y., Prins, Jan F., Liu, Jinze
Publicado em 2010

Nuclear factor I/B is an oncogene in small cell lung cancer

Por Dooley, Alison L., Winslow, Monte M., Chiang, Derek Y., Banerji, Shantanu, Stransky, Nicolas, Dayton, Talya L., Snyder, Eric L., Senna, Stephanie, Whittaker, Charles A., Bronson, Roderick T., Crowley, Denise, Barretina, Jordi, Garraway, Levi, Meyerson, Matthew, Jacks, Tyler
Publicado em 2011