Statistical tests for natural selection on regulatory regions based on the strength of transcription factor binding sites

od Moses, Alan M
Wydane 2009

Inferring Selection on Amino Acid Preference in Protein Domains

od Moses, Alan M., Durbin, Richard
Wydane 2009

Modeling the evolution of a classic genetic switch

od Josephides, Christos, Moses, Alan M
Wydane 2011

Ranking insertion, deletion and nonsense mutations based on their effect on genetic information

od Zia, Amin, Moses, Alan M
Wydane 2011

Towards a theoretical understanding of false positives in DNA motif finding

od Zia, Amin, Moses, Alan M
Wydane 2012

In vitro evolution goes deep

od Moses, Alan M., Davidson, Alan R.
Wydane 2011

An Unsupervised kNN Method to Systematically Detect Changes in Protein Localization in High-Throughput Microscopy Images

od Lu, Alex Xijie, Moses, Alan M.
Wydane w PLoS One (2016)

Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase

od Moses, Alan M, Hériché, Jean-Karim, Durbin, Richard
Wydane 2007

Short linear motifs – ex nihilo evolution of protein regulation

od Davey, Norman E., Cyert, Martha S., Moses, Alan M.
Wydane w Cell Commun Signal (2015)

Evidence for widespread adaptive evolution of gene expression in budding yeast

od Fraser, Hunter B., Moses, Alan M., Schadt, Eric E.
Wydane 2010

Reply to Jensen and Rando: Population size change does not account for widespread gene expression adaptation in yeast

od Fraser, Hunter B., Moses, Alan M., Schadt, Eric E.
Wydane 2010

Decreased Transcription Factor Binding Levels Nearby Primate Pseudogenes Suggest Regulatory Degeneration

od Douglas, Gavin M., Wilson, Michael D., Moses, Alan M.
Wydane w Mol Biol Evol (2016)

NoLogo: a new statistical model highlights the diversity and suggests new classes of Crm1-dependent nuclear export signals

od Liku, Muluye E., Legere, Elizabeth-Ann, Moses, Alan M.
Wydane w BMC Bioinformatics (2018)

A Noisy Analog-to-Digital Converter Connects Cytosolic Calcium Bursts to Transcription Factor Nuclear Localization Pulses in Yeast

od Hsu, Ian S., Strome, Bob, Plotnikov, Sergey, Moses, Alan M.
Wydane w G3 (Bethesda) (2018)

Extracting and Integrating Protein Localization Changes from Multiple Image Screens of Yeast Cells

od Lu, Alex X, Handfield, Louis-Francois, Moses, Alan M
Wydane w Bio Protoc (2018)

Turnover of protein phosphorylation evolving under stabilizing selection

od Landry, Christian R., Freschi, Luca, Zarin, Taraneh, Moses, Alan M.
Wydane 2014

Local statistics allow quantification of cell-to-cell variability from high-throughput microscope images

od Handfield, Louis-François, Strome, Bob, Chong, Yolanda T., Moses, Alan M.
Wydane w Bioinformatics (2015)

YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells

od Lu, Alex X, Zarin, Taraneh, Hsu, Ian S, Moses, Alan M
Wydane w Bioinformatics (2019)

Regulatory evolution in proteins by turnover and lineage-specific changes of cyclin-dependent kinase consensus sites

od Moses, Alan M., Liku, Muluye E., Li, Joachim J., Durbin, Richard
Wydane 2007

NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction

od Nguyen Ba, Alex N, Pogoutse, Anastassia, Provart, Nicholas, Moses, Alan M
Wydane 2009