DNase-capture reveals differential transcription factor binding modalities

מאת Kang, Daniel, Sherwood, Richard, Barkal, Amira, Hashimoto, Tatsunori, Engstrom, Logan, Gifford, David
הוצא לאור ב PLoS One (2017)

Cas9 Functionally Opens Chromatin

מאת Barkal, Amira A., Srinivasan, Sharanya, Hashimoto, Tatsunori, Gifford, David K., Sherwood, Richard I.
הוצא לאור ב PLoS One (2016)

An atlas of transcriptional, chromatin accessibility, and surface marker changes in human mesoderm development

מאת Koh, Pang Wei, Sinha, Rahul, Barkal, Amira A., Morganti, Rachel M., Chen, Angela, Weissman, Irving L., Ang, Lay Teng, Kundaje, Anshul, Loh, Kyle M.
הוצא לאור ב Sci Data (2016)

Discovery of non-directional and directional pioneer transcription factors by modeling DNase profile magnitude and shape

מאת Sherwood, Richard I, Hashimoto, Tatsunori, O'Donnell, Charles W, Lewis, Sophia, Barkal, Amira A, van Hoff, John Peter, Karun, Vivek, Jaakkola, Tommi, Gifford, David K
יצא לאור 2014

A synergistic DNA logic predicts genome-wide chromatin accessibility

מאת Hashimoto, Tatsunori, Sherwood, Richard I., Kang, Daniel D., Rajagopal, Nisha, Barkal, Amira A., Zeng, Haoyang, Emons, Bart J.M., Srinivasan, Sharanya, Jaakkola, Tommi, Gifford, David K.
הוצא לאור ב Genome Res (2016)

CD24 signalling through macrophage Siglec-10 is a new target for cancer immunotherapy

מאת Barkal, Amira A, Brewer, Rachel E., Markovic, Maxim, Kowarsky, Mark, Barkal, Sammy A, Zaro, Balyn W., Krishnan, Venkatesh, Hatakeyama, Jason, Dorigo, Oliver, Barkal, Layla J, Weissman, Irving L.
הוצא לאור ב Nature (2019)

Eradication of Canine Diffuse Large B-Cell Lymphoma in a Murine Xenograft Model with CD47 Blockade and Anti-CD20

מאת Weiskopf, Kipp, Anderson, Katie L., Ito, Daisuke, Schnorr, Peter J., Tomiyasu, Hirotaka, Ring, Aaron M., Bloink, Kristin, Efe, Jem, Rue, Sarah, Lowery, David, Barkal, Amira, Prohaska, Susan, McKenna, Kelly M., Cornax, Ingrid, O'Brien, Timothy D., O'Sullivan, M. Gerard, Weissman, Irving L., Modiano, Jaime F.
הוצא לאור ב Cancer Immunol Res (2016)

Engagement of MHC class I by the inhibitory receptor LILRB1 suppresses macrophages and is a target of cancer immunotherapy

מאת Barkal, Amira A., Weiskopf, Kipp, Kao, Kevin S., Gordon, Sydney R., Rosental, Benyamin, Yiu, Ying Y., George, Benson M., Markovic, Maxim, Ring, Nan G., Tsai, Jonathan M., McKenna, Kelly M., Ho, Po Yi, Cheng, Robin Z., Chen, James Y., Barkal, Layla J., Ring, Aaron M., Weissman, Irving L., Maute, Roy L.
הוצא לאור ב Nat Immunol (2017)

Mapping the pairwise choices leading from pluripotency to human bone, heart and other mesoderm cell-types

מאת Loh, Kyle M, Chen, Angela, Koh, Pang Wei, Deng, Tianda Z, Sinha, Rahul, Tsai, Jonathan M, Barkal, Amira A, Shen, Kimberle Y, Jain, Rajan, Morganti, Rachel M, Ng, Shyh-Chang, Fernhoff, Nathaniel B, George, Benson M, Wernig, Gerlinde, Salomon, Rachel EA, Chen, Zhenghao, Vogel, Hannes, Epstein, Jonathan A, Kundaje, Anshul, Talbot, William S, Beachy, Philip A, Ang, Lay Teng, Weissman, Irving L
הוצא לאור ב Cell (2016)

Identification of phagocytosis regulators using magnetic genome-wide CRISPR screens

מאת Haney, Michael S., Bohlen, Christopher J., Morgens, David W, Ousey, James A., Barkal, Amira A., Tsui, C. Kimberly, Ego, Braeden, Levin, Roni, Kamber, Roarke, Collins, Hannah, Tucker, Andrew, Li, Amy, Vorselen, Daan, Labitigan, Lorenzo, Crane, Emily, Boyle, Evan, Jiang, Lihua, Chan, Joanne, Rincón, Esther, Greenleaf, William J., Li, Billy, Snyder, Michael P., Weissman, Irving L., Theriot, Julie A., Collins, Sean R., Barres, Ben A., Bassik, Michael C.
הוצא לאור ב Nat Genet (2018)

CD47-blocking immunotherapies stimulate macrophage-mediated destruction of small-cell lung cancer

מאת Weiskopf, Kipp, Jahchan, Nadine S., Schnorr, Peter J., Cristea, Sandra, Ring, Aaron M., Maute, Roy L., Volkmer, Anne K., Volkmer, Jens-Peter, Liu, Jie, Lim, Jing Shan, Yang, Dian, Seitz, Garrett, Nguyen, Thuyen, Wu, Di, Jude, Kevin, Guerston, Heather, Barkal, Amira, Trapani, Francesca, George, Julie, Poirier, John T., Gardner, Eric E., Miles, Linde A., de Stanchina, Elisa, Lofgren, Shane M., Vogel, Hannes, Winslow, Monte M., Dive, Caroline, Thomas, Roman K., Rudin, Charles M., van de Rijn, Matt, Majeti, Ravindra, Garcia, K. Christopher, Weissman, Irving L., Sage, Julien
הוצא לאור ב J Clin Invest (2016)