Cas9 Functionally Opens Chromatin

per Barkal, Amira A., Srinivasan, Sharanya, Hashimoto, Tatsunori, Gifford, David K., Sherwood, Richard I.
Publicat a PLoS One (2016)

An atlas of transcriptional, chromatin accessibility, and surface marker changes in human mesoderm development

per Koh, Pang Wei, Sinha, Rahul, Barkal, Amira A., Morganti, Rachel M., Chen, Angela, Weissman, Irving L., Ang, Lay Teng, Kundaje, Anshul, Loh, Kyle M.
Publicat a Sci Data (2016)

Discovery of non-directional and directional pioneer transcription factors by modeling DNase profile magnitude and shape

per Sherwood, Richard I, Hashimoto, Tatsunori, O'Donnell, Charles W, Lewis, Sophia, Barkal, Amira A, van Hoff, John Peter, Karun, Vivek, Jaakkola, Tommi, Gifford, David K
Publicat 2014

A synergistic DNA logic predicts genome-wide chromatin accessibility

per Hashimoto, Tatsunori, Sherwood, Richard I., Kang, Daniel D., Rajagopal, Nisha, Barkal, Amira A., Zeng, Haoyang, Emons, Bart J.M., Srinivasan, Sharanya, Jaakkola, Tommi, Gifford, David K.
Publicat a Genome Res (2016)

CD24 signalling through macrophage Siglec-10 is a new target for cancer immunotherapy

per Barkal, Amira A, Brewer, Rachel E., Markovic, Maxim, Kowarsky, Mark, Barkal, Sammy A, Zaro, Balyn W., Krishnan, Venkatesh, Hatakeyama, Jason, Dorigo, Oliver, Barkal, Layla J, Weissman, Irving L.
Publicat a Nature (2019)

Engagement of MHC class I by the inhibitory receptor LILRB1 suppresses macrophages and is a target of cancer immunotherapy

per Barkal, Amira A., Weiskopf, Kipp, Kao, Kevin S., Gordon, Sydney R., Rosental, Benyamin, Yiu, Ying Y., George, Benson M., Markovic, Maxim, Ring, Nan G., Tsai, Jonathan M., McKenna, Kelly M., Ho, Po Yi, Cheng, Robin Z., Chen, James Y., Barkal, Layla J., Ring, Aaron M., Weissman, Irving L., Maute, Roy L.
Publicat a Nat Immunol (2017)

Mapping the pairwise choices leading from pluripotency to human bone, heart and other mesoderm cell-types

per Loh, Kyle M, Chen, Angela, Koh, Pang Wei, Deng, Tianda Z, Sinha, Rahul, Tsai, Jonathan M, Barkal, Amira A, Shen, Kimberle Y, Jain, Rajan, Morganti, Rachel M, Ng, Shyh-Chang, Fernhoff, Nathaniel B, George, Benson M, Wernig, Gerlinde, Salomon, Rachel EA, Chen, Zhenghao, Vogel, Hannes, Epstein, Jonathan A, Kundaje, Anshul, Talbot, William S, Beachy, Philip A, Ang, Lay Teng, Weissman, Irving L
Publicat a Cell (2016)

Identification of phagocytosis regulators using magnetic genome-wide CRISPR screens

per Haney, Michael S., Bohlen, Christopher J., Morgens, David W, Ousey, James A., Barkal, Amira A., Tsui, C. Kimberly, Ego, Braeden, Levin, Roni, Kamber, Roarke, Collins, Hannah, Tucker, Andrew, Li, Amy, Vorselen, Daan, Labitigan, Lorenzo, Crane, Emily, Boyle, Evan, Jiang, Lihua, Chan, Joanne, Rincón, Esther, Greenleaf, William J., Li, Billy, Snyder, Michael P., Weissman, Irving L., Theriot, Julie A., Collins, Sean R., Barres, Ben A., Bassik, Michael C.
Publicat a Nat Genet (2018)