Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding

Por Guo, Yuchun, Gifford, David K.
Publicado no BMC Genomics (2017)

Predicting the impact of non-coding variants on DNA methylation

Por Zeng, Haoyang, Gifford, David K.
Publicado no Nucleic Acids Res (2017)

Differential chromatin profiles partially determine transcription factor binding

Por Chen, Rujian, Gifford, David K.
Publicado no PLoS One (2017)

ReadDB Provides Efficient Storage for Mapped Short Reads

Por Rolfe, P Alexander, Gifford, David K
Publicado em 2011

High-resolution genetic mapping with pooled sequencing

Por Edwards, Matthew D, Gifford, David K
Publicado em 2012

High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints

Por Guo, Yuchun, Mahony, Shaun, Gifford, David K.
Publicado em 2012

Universal Count Correction for High-Throughput Sequencing

Por Hashimoto, Tatsunori B., Edwards, Matthew D., Gifford, David K.
Publicado em 2014

Convolutional neural network architectures for predicting DNA–protein binding

Por Zeng, Haoyang, Edwards, Matthew D., Liu, Ge, Gifford, David K.
Publicado no Bioinformatics (2016)

Accurate eQTL prioritization with an ensemble-based framework

Por Zeng, Haoyang, Edwards, Matthew D., Guo, Yuchun, Gifford, David K.
Publicado no Hum Mutat (2017)

Automated Discovery of Functional Generality of Human Gene Expression Programs

Por Gerber, Georg K, Dowell, Robin D, Jaakkola, Tommi S, Gifford, David K
Publicado em 2007

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes

Por Bar-Joseph, Ziv, Gerber, Georg, Simon, Itamar, Gifford, David K., Jaakkola, Tommi S.
Publicado em 2003

Control of Transcription by Cell Size

Por Wu, Chia-Yung, Rolfe, P. Alexander, Gifford, David K., Fink, Gerald R.
Publicado em 2010

Rapid haplotype inference for nuclear families

Por Williams, Amy L, Housman, David E, Rinard, Martin C, Gifford, David K
Publicado em 2010

Cas9 Functionally Opens Chromatin

Por Barkal, Amira A., Srinivasan, Sharanya, Hashimoto, Tatsunori, Gifford, David K., Sherwood, Richard I.
Publicado no PLoS One (2016)

Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast

Por Bumgarner, Stacie L., Dowell, Robin D., Grisafi, Paula, Gifford, David K., Fink, Gerald R.
Publicado em 2009

Ruler Arrays Reveal Haploid Genomic Structural Variation

Por Rolfe, P. Alexander, Bernstein, Douglas A., Grisafi, Paula, Fink, Gerald R., Gifford, David K.
Publicado em 2012

MARIS: Method for Analyzing RNA following Intracellular Sorting

Por Hrvatin, Siniša, Deng, Francis, O'Donnell, Charles W., Gifford, David K., Melton, Douglas A.
Publicado em 2014

Interactions between chromosomal and nonchromosomal elements reveal missing heritability

Por Edwards, Matthew D., Symbor-Nagrabska, Anna, Dollard, Lindsey, Gifford, David K., Fink, Gerald R.
Publicado em 2014

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET

Por Mathur, Divya, Danford, Timothy W, Boyer, Laurie A, Young, Richard A, Gifford, David K, Jaenisch, Rudolf
Publicado em 2008

Feed-Forward Regulation of a Cell Fate Determinant by an RNA-Binding Protein Generates Asymmetry in Yeast

Por Wolf, Joshua J., Dowell, Robin D., Mahony, Shaun, Rabani, Michal, Gifford, David K., Fink, Gerald R.
Publicado em 2010