Automated Discovery of Functional Generality of Human Gene Expression Programs

Por Gerber, Georg K, Dowell, Robin D, Jaakkola, Tommi S, Gifford, David K
Publicado em 2007

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes

Por Bar-Joseph, Ziv, Gerber, Georg, Simon, Itamar, Gifford, David K., Jaakkola, Tommi S.
Publicado em 2003

Lineage-based identification of cellular states and expression programs

Por Hashimoto, Tatsunori, Jaakkola, Tommi, Sherwood, Richard, Mazzoni, Esteban O., Wichterle, Hynek, Gifford, David
Publicado em 2012

Prediction of Organic Reaction Outcomes Using Machine Learning

Por Coley, Connor W., Barzilay, Regina, Jaakkola, Tommi S., Green, William H., Jensen, Klavs F.
Publicado no ACS Cent Sci (2017)

Validation and refinement of gene-regulatory pathways on a network of physical interactions

Por Yeang, Chen-Hsiang, Mak, H Craig, McCuine, Scott, Workman, Christopher, Jaakkola, Tommi, Ideker, Trey
Publicado em 2005

Discovering homotypic binding events at high spatial resolution

Por Guo, Yuchun, Papachristoudis, Georgios, Altshuler, Robert C., Gerber, Georg K., Jaakkola, Tommi S., Gifford, David K., Mahony, Shaun
Publicado em 2010

Discovery of non-directional and directional pioneer transcription factors by modeling DNase profile magnitude and shape

Por Sherwood, Richard I, Hashimoto, Tatsunori, O'Donnell, Charles W, Lewis, Sophia, Barkal, Amira A, van Hoff, John Peter, Karun, Vivek, Jaakkola, Tommi, Gifford, David K
Publicado em 2014

A synergistic DNA logic predicts genome-wide chromatin accessibility

Por Hashimoto, Tatsunori, Sherwood, Richard I., Kang, Daniel D., Rajagopal, Nisha, Barkal, Amira A., Zeng, Haoyang, Emons, Bart J.M., Srinivasan, Sharanya, Jaakkola, Tommi, Gifford, David K.
Publicado no Genome Res (2016)