BFL: a node and edge betweenness based fast layout algorithm for large scale networks

Por Hashimoto, Tatsunori B, Nagasaki, Masao, Kojima, Kaname, Miyano, Satoru
Publicado em 2009

Tree preserving embedding

Por Shieh, Albert D., Hashimoto, Tatsunori B., Airoldi, Edoardo M.
Publicado em 2011

Universal Count Correction for High-Throughput Sequencing

Por Hashimoto, Tatsunori B., Edwards, Matthew D., Gifford, David K.
Publicado em 2014

GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding

Por Zeng, Haoyang, Hashimoto, Tatsunori, Kang, Daniel D., Gifford, David K.
Publicado no Bioinformatics (2016)

Cloning-free CRISPR

Por Arbab, Mandana, Srinivasan, Sharanya, Hashimoto, Tatsunori, Geijsen, Niels, Sherwood, Richard I.
Publicado no Stem Cell Reports (2015)

DNase-capture reveals differential transcription factor binding modalities

Por Kang, Daniel, Sherwood, Richard, Barkal, Amira, Hashimoto, Tatsunori, Engstrom, Logan, Gifford, David
Publicado no PLoS One (2017)

Lineage-based identification of cellular states and expression programs

Por Hashimoto, Tatsunori, Jaakkola, Tommi, Sherwood, Richard, Mazzoni, Esteban O., Wichterle, Hynek, Gifford, David
Publicado em 2012

Cas9 Functionally Opens Chromatin

Por Barkal, Amira A., Srinivasan, Sharanya, Hashimoto, Tatsunori, Gifford, David K., Sherwood, Richard I.
Publicado no PLoS One (2016)

Inferring Multidimensional Rates of Aging from Cross-Sectional Data

Por Pierson, Emma, Koh, Pang Wei, Hashimoto, Tatsunori, Koller, Daphne, Leskovec, Jure, Eriksson, Nicholas, Liang, Percy
Publicado no Proc Mach Learn Res (2019)

Quantifying Condition-Dependent Intracellular Protein Levels Enables High-Precision Fitness Estimates

Por Geiler-Samerotte, Kerry A., Hashimoto, Tatsunori, Dion, Michael F., Budnik, Bogdan A., Airoldi, Edoardo M., Drummond, D. Allan
Publicado em 2013

Correction: Quantifying Condition-Dependent Intracellular Protein Levels Enables High-Precision Fitness Estimates

Por Geiler-Samerotte, Kerry A., Hashimoto, Tatsunori, Dion, Michael F., Budnik, Bogdan A., Airoldi, Edoardo M., Drummond, D. Allan
Publicado em 2013

Discovery of non-directional and directional pioneer transcription factors by modeling DNase profile magnitude and shape

Por Sherwood, Richard I, Hashimoto, Tatsunori, O'Donnell, Charles W, Lewis, Sophia, Barkal, Amira A, van Hoff, John Peter, Karun, Vivek, Jaakkola, Tommi, Gifford, David K
Publicado em 2014

A synergistic DNA logic predicts genome-wide chromatin accessibility

Por Hashimoto, Tatsunori, Sherwood, Richard I., Kang, Daniel D., Rajagopal, Nisha, Barkal, Amira A., Zeng, Haoyang, Emons, Bart J.M., Srinivasan, Sharanya, Jaakkola, Tommi, Gifford, David K.
Publicado no Genome Res (2016)