T-Analyst: a program for efficient analysis of protein conformational changes by torsion angles

Yazar: Ai, Rizi, Qaiser Fatmi, M., Chang, Chia-en A.
Baskı/Yayın Bilgisi 2010

Distinct DNA Methylation Patterns of Rheumatoid Arthritis Peripheral Blood and Synovial Tissue T Cells

Yazar: Ai, Rizi, Boyle, David L., Wang, Wei, Firestein, Gary S.
Yayımlandı ACR Open Rheumatol (2021)

Agonist and antagonist binding to the nuclear vitamin D receptor: dynamics, mutation effects and functional implications

Yazar: Yaghmaei, Sepideh, Roberts, Christopher, Ai, Rizi, Mizwicki, Mathew T, Chang, Chia-en A
Baskı/Yayın Bilgisi 2013

Computationally expanding infinium HumanMethylation450 BeadChip array data to reveal distinct DNA methylation patterns of rheumatoid arthritis

Yazar: Fan, Shicai, Li, Chengzhe, Ai, Rizi, Wang, Mengchi, Firestein, Gary S., Wang, Wei
Yayımlandı Bioinformatics (2016)

Bayesian Networks Predict Neuronal Transdifferentiation

Yazar: Ainsworth, Richard I., Ai, Rizi, Ding, Bo, Li, Nan, Zhang, Kai, Wang, Wei
Yayımlandı G3 (Bethesda) (2018)

Joint Location–Specific JAK‐STAT Signaling in Rheumatoid Arthritis Fibroblast‐like Synoviocytes

Yazar: Hammaker, Deepa, Nygaard, Gyrid, Kuhs, Amanda, Ai, Rizi, Boyle, David L., Wang, Wei, Firestein, Gary S.
Yayımlandı ACR Open Rheumatol (2019)

Normalization and noise reduction for single cell RNA-seq experiments

Yazar: Ding, Bo, Zheng, Lina, Zhu, Yun, Li, Nan, Jia, Haiyang, Ai, Rizi, Wildberg, Andre, Wang, Wei
Yayımlandı Bioinformatics (2015)

DNA Methylome Signature in Early Rheumatoid Arthritis Synoviocytes Compared with Longstanding Rheumatoid Arthritis Synoviocytes

Yazar: Ai, Rizi, Whitaker, John W., Boyle, David L., Tak, Paul Peter, Gerlag, Danielle M., Wang, Wei, Firestein, Gary S.
Yayımlandı Arthritis Rheumatol (2015)

Joint-specific DNA methylation and transcriptome signatures in rheumatoid arthritis identify distinct pathogenic processes

Yazar: Ai, Rizi, Hammaker, Deepa, Boyle, David L., Morgan, Rachel, Walsh, Alice M., Fan, Shicai, Firestein, Gary S., Wang, Wei
Yayımlandı Nat Commun (2016)

Integrative analysis with expanded DNA methylation data reveals common key regulators and pathways in cancers

Yazar: Fan, Shicai, Tang, Jianxiong, Li, Nan, Zhao, Ying, Ai, Rizi, Zhang, Kai, Wang, Mengchi, Du, Wei, Wang, Wei
Yayımlandı NPJ Genom Med (2019)

Identification of DNA motifs that regulate DNA methylation

Yazar: Wang, Mengchi, Zhang, Kai, Ngo, Vu, Liu, Chengyu, Fan, Shicai, Whitaker, John W, Chen, Yue, Ai, Rizi, Chen, Zhao, Wang, Jun, Zheng, Lina, Wang, Wei
Yayımlandı Nucleic Acids Res (2019)

Abnormal PTPN11 enhancer methylation promotes rheumatoid arthritis fibroblast-like synoviocyte aggressiveness and joint inflammation

Yazar: Maeshima, Keisuke, Stanford, Stephanie M., Hammaker, Deepa, Sacchetti, Cristiano, Zeng, Li-fan, Ai, Rizi, Zhang, Vida, Boyle, David L., Aleman Muench, German R., Feng, Gen-Sheng, Whitaker, John W., Zhang, Zhong-Yin, Wang, Wei, Bottini, Nunzio, Firestein, Gary S.
Yayımlandı JCI Insight (2016)

Comprehensive epigenetic landscape of rheumatoid arthritis fibroblast-like synoviocytes

Yazar: Ai, Rizi, Laragione, Teresina, Hammaker, Deepa, Boyle, David L., Wildberg, Andre, Maeshima, Keisuke, Palescandolo, Emanuele, Krishna, Vinod, Pocalyko, David, Whitaker, John W., Bai, Yuchen, Nagpal, Sunil, Bachman, Kurtis E., Ainsworth, Richard I., Wang, Mengchi, Ding, Bo, Gulko, Percio S., Wang, Wei, Firestein, Gary S.
Yayımlandı Nat Commun (2018)

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain

Yazar: Lake, Blue B., Ai, Rizi, Kaeser, Gwendolyn E., Salathia, Neeraj S., Yung, Yun C., Liu, Rui, Wildberg, Andre, Gao, Derek, Fung, Ho-Lim, Chen, Song, Vijayaraghavan, Raakhee, Wong, Julian, Chen, Allison, Sheng, Xiaoyan, Kaper, Fiona, Shen, Richard, Ronaghi, Mostafa, Fan, Jian-Bing, Wang, Wei, Chun, Jerold, Zhang, Kun
Yayımlandı Science (2016)

PTPN14 phosphatase and YAP promote TGFβ signaling in rheumatoid synoviocytes

Yazar: Bottini, Angel, Wu, Dennis J, Ai, Rizi, Le Roux, Michelle, Bartok, Beatrix, Bombardieri, Michele, Doody, Karen M., Zhang, Vida, Sacchetti, Cristiano, Zoccheddu, Martina, Lonic, Ana, Li, Xiaochun, Boyle, David, Hammaker, Deepa, Meng, Tzu-Ching, Liu, Lin, Corr, Maripat, Stanford, Stephanie M., Lewis, Myles, Wang, Wei, Firestein, Gary S., Khew-Goodall, Yeesim, Pitzalis, Costantino, Bottini, Nunzio
Yayımlandı Ann Rheum Dis (2019)

Synoviocyte-targeted therapy synergizes with TNF inhibition in arthritis reversal

Yazar: Svensson, Mattias N. D., Zoccheddu, Martina, Yang, Shen, Nygaard, Gyrid, Secchi, Christian, Doody, Karen M., Slowikowski, Kamil, Mizoguchi, Fumitaka, Humby, Frances, Hands, Rebecca, Santelli, Eugenio, Sacchetti, Cristiano, Wakabayashi, Kuninobu, Wu, Dennis J., Barback, Christopher, Ai, Rizi, Wang, Wei, Sims, Gary P., Mydel, Piotr, Kasama, Tsuyoshi, Boyle, David L., Galimi, Francesco, Vera, David, Tremblay, Michel L., Raychaudhuri, Soumya, Brenner, Michael B., Firestein, Gary S., Pitzalis, Costantino, Ekwall, Anna-Karin H., Stanford, Stephanie M., Bottini, Nunzio
Yayımlandı Sci Adv (2020)

Assessing characteristics of RNA amplification methods for single cell RNA sequencing

Yazar: Dueck, Hannah R., Ai, Rizi, Camarena, Adrian, Ding, Bo, Dominguez, Reymundo, Evgrafov, Oleg V., Fan, Jian-Bing, Fisher, Stephen A., Herstein, Jennifer S., Kim, Tae Kyung, Kim, Jae Mun (Hugo), Lin, Ming-Yi, Liu, Rui, Mack, William J., McGroty, Sean, Nguyen, Joseph D., Salathia, Neeraj, Shallcross, Jamie, Souaiaia, Tade, Spaethling, Jennifer M., Walker, Christopher P., Wang, Jinhui, Wang, Kai, Wang, Wei, Wildberg, Andre, Zheng, Lina, Chow, Robert H., Eberwine, James, Knowles, James A., Zhang, Kun, Kim, Junhyong
Yayımlandı BMC Genomics (2016)

Lasp1 regulates adherens junction dynamics and fibroblast transformation in destructive arthritis

Yazar: Beckmann, Denise, Römer-Hillmann, Anja, Krause, Annika, Hansen, Uwe, Wehmeyer, Corinna, Intemann, Johanna, de Gorter, David J. J., Dankbar, Berno, Hillen, Jan, Heitzmann, Marianne, Begemann, Isabell, Galic, Milos, Weinhage, Toni, Foell, Dirk, Ai, Rizi, Kremerskothen, Joachim, Kiener, Hans P., Müller, Sylvia, Kamradt, Thomas, Schröder, Christopher, Leitão, Elsa, Horsthemke, Bernhard, Rosenstiel, Philip, Nordström, Karl, Gasparoni, Gilles, Gasparoni, Nina, Walter, Jörn, Li, Na, Yang, Xinyi, Chung, Ho-Ryun, Pavenstädt, Hermann, Lindemann, Nico, Schnittler, Hans J., Wang, Wei, Firestein, Gary S., Pap, Thomas, Korb-Pap, Adelheid
Yayımlandı Nat Commun (2021)