MeDeCom: discovery and quantification of latent components of heterogeneous methylomes

por Lutsik, Pavlo, Slawski, Martin, Gasparoni, Gilles, Vedeneev, Nikita, Hein, Matthias, Walter, Jörn
Publicado en Genome Biol (2017)

Draft Genome Sequence and Annotation of the Obligate Bacterial Endosymbiont Caedibacter taeniospiralis, Causative Agent of the Killer Phenotype in Paramecium tetraurelia

por Zaburannyi, Nestor, Grosser, Katrin, Gasparoni, Gilles, Müller, Rolf, Schrallhammer, Martina, Simon, Martin
Publicado en Genome Announc (2018)

Identification and analysis of methylation call differences between bisulfite microarray and bisulfite sequencing data with statistical learning techniques

por Döring, Matthias, Gasparoni, Gilles, Gries, Jasmin, Nordström, Karl, Lutsik, Pavlo, Walter, Jörn, Pfeifer, Nico
Publicado en BMC Bioinformatics (2015)

Dual-Seq reveals genome and transcriptome of Caedibacter taeniospiralis, obligate endosymbiont of Paramecium

por Pirritano, Marcello, Zaburannyi, Nestor, Grosser, Katrin, Gasparoni, Gilles, Müller, Rolf, Simon, Martin, Schrallhammer, Martina
Publicado en Sci Rep (2020)

More than the “Killer Trait”: Infection with the Bacterial Endosymbiont Caedibacter taeniospiralis Causes Transcriptomic Modulation in Paramecium Host

por Grosser, Katrin, Ramasamy, Pathmanaban, Amirabad, Azim Dehghani, Schulz, Marcel H, Gasparoni, Gilles, Simon, Martin, Schrallhammer, Martina
Publicado en Genome Biol Evol (2018)

Yeast Viral Killer Toxin K1 Induces Specific Host Cell Adaptions via Intrinsic Selection Pressure

por Gier, Stefanie, Simon, Martin, Gasparoni, Gilles, Khalifa, Salem, Schulz, Marcel H., Schmitt, Manfred J., Breinig, Frank
Publicado en Appl Environ Microbiol (2020)

DNA methylation alterations in iPSC- and hESC-derived neurons: potential implications for neurological disease modeling

por de Boni, Laura, Gasparoni, Gilles, Haubenreich, Carolin, Tierling, Sascha, Schmitt, Ina, Peitz, Michael, Koch, Philipp, Walter, Jörn, Wüllner, Ullrich, Brüstle, Oliver
Publicado en Clin Epigenetics (2018)

reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4(+) memory T cells

por Kinkley, Sarah, Helmuth, Johannes, Polansky, Julia K., Dunkel, Ilona, Gasparoni, Gilles, Fröhler, Sebastian, Chen, Wei, Walter, Jörn, Hamann, Alf, Chung, Ho-Ryun
Publicado en Nat Commun (2016)

Adult monozygotic twins discordant for intra-uterine growth have indistinguishable genome-wide DNA methylation profiles

por Souren, Nicole YP, Lutsik, Pavlo, Gasparoni, Gilles, Tierling, Sascha, Gries, Jasmin, Riemenschneider, Matthias, Fryns, Jean-Pierre, Derom, Catherine, Zeegers, Maurice P, Walter, Jörn
Publicado 2013

Human Cytomegalovirus Drives Epigenetic Imprinting of the IFNG Locus in NKG2C(hi) Natural Killer Cells

por Luetke-Eversloh, Merlin, Hammer, Quirin, Durek, Pawel, Nordström, Karl, Gasparoni, Gilles, Pink, Matthias, Hamann, Alf, Walter, Jörn, Chang, Hyun-Dong, Dong, Jun, Romagnani, Chiara
Publicado 2014

DNA methylation signatures of monozygotic twins clinically discordant for multiple sclerosis

por Souren, Nicole Y., Gerdes, Lisa A., Lutsik, Pavlo, Gasparoni, Gilles, Beltrán, Eduardo, Salhab, Abdulrahman, Kümpfel, Tania, Weichenhan, Dieter, Plass, Christoph, Hohlfeld, Reinhard, Walter, Jörn
Publicado en Nat Commun (2019)

Antisense Oligonucleotide- and CRISPR-Cas9-Mediated Rescue of mRNA Splicing for a Deep Intronic CLRN1 Mutation

por Panagiotopoulos, Anna-Lena, Karguth, Nina, Pavlou, Marina, Böhm, Sybille, Gasparoni, Gilles, Walter, Jörn, Graf, Alexander, Blum, Helmut, Biel, Martin, Riedmayr, Lisa Maria, Becirovic, Elvir
Publicado en Mol Ther Nucleic Acids (2020)

Prediction of single-cell gene expression for transcription factor analysis

por Behjati Ardakani, Fatemeh, Kattler, Kathrin, Heinen, Tobias, Schmidt, Florian, Feuerborn, David, Gasparoni, Gilles, Lepikhov, Konstantin, Nell, Patrick, Hengstler, Jan, Walter, Jörn, Schulz, Marcel H
Publicado en Gigascience (2020)

Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype

por Kressler, Christopher, Gasparoni, Gilles, Nordström, Karl, Hamo, Dania, Salhab, Abdulrahman, Dimitropoulos, Christoforos, Tierling, Sascha, Reinke, Petra, Volk, Hans-Dieter, Walter, Jörn, Hamann, Alf, Polansky, Julia K.
Publicado en Front Immunol (2021)

Human IgA-Expressing Bone Marrow Plasma Cells Characteristically Upregulate Programmed Cell Death Protein-1 Upon B Cell Receptor Stimulation

por Wiedemann, Annika, Lettau, Marie, Wirries, Ina, Jungmann, Annemarie, Salhab, Abdulrahman, Gasparoni, Gilles, Mei, Henrik E., Perka, Carsten, Walter, Jörn, Radbruch, Andreas, Lino, Andreia C., Dörner, Thomas
Publicado en Front Immunol (2021)

A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

por Salhab, Abdulrahman, Nordström, Karl, Gasparoni, Gilles, Kattler, Kathrin, Ebert, Peter, Ramirez, Fidel, Arrigoni, Laura, Müller, Fabian, Polansky, Julia K., Cadenas, Cristina, G.Hengstler, Jan, Lengauer, Thomas, Manke, Thomas, Walter, Jörn
Publicado en Genome Biol (2018)

Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data

por Nordström, Karl J V, Schmidt, Florian, Gasparoni, Nina, Salhab, Abdulrahman, Gasparoni, Gilles, Kattler, Kathrin, Müller, Fabian, Ebert, Peter, Costa, Ivan G, Pfeifer, Nico, Lengauer, Thomas, Schulz, Marcel H, Walter, Jörn
Publicado en Nucleic Acids Res (2019)

The sncRNA Zoo: a repository for circulating small noncoding RNAs in animals

por Fehlmann, Tobias, Backes, Christina, Pirritano, Marcello, Laufer, Thomas, Galata, Valentina, Kern, Fabian, Kahraman, Mustafa, Gasparoni, Gilles, Ludwig, Nicole, Lenhof, Hans-Peter, Gregersen, Henrike A, Francke, Richard, Meese, Eckart, Simon, Martin, Keller, Andreas
Publicado en Nucleic Acids Res (2019)

Lack of H3K27 trimethylation is associated with 1p/19q codeletion in diffuse gliomas

por Filipski, Katharina, Braun, Yannick, Zinke, Jenny, Roller, Bastian, Baumgarten, Peter, Wagner, Marlies, Senft, Christian, Zeiner, Pia S., Ronellenfitsch, Michael W., Steinbach, Joachim P., Plate, Karl H., Gasparoni, Gilles, Mittelbronn, Michel, Capper, David, Harter, Patrick N.
Publicado en Acta Neuropathol (2019)

A gene therapy for inherited blindness using dCas9-VPR–mediated transcriptional activation

por Böhm, Sybille, Splith, Victoria, Riedmayr, Lisa Maria, Rötzer, René Dominik, Gasparoni, Gilles, Nordström, Karl J. V., Wagner, Johanna Elisabeth, Hinrichsmeyer, Klara Sonnie, Walter, Jörn, Wahl-Schott, Christian, Fenske, Stefanie, Biel, Martin, Michalakis, Stylianos, Becirovic, Elvir
Publicado en Sci Adv (2020)