Letting the data speak for themselves: a fully Bayesian approach to transcriptome assembly

Tekijä Schulz, Marcel H
Julkaisussa Genome Biol (2014)

On the problem of confounders in modeling gene expression

Tekijä Schmidt, Florian, Schulz, Marcel H
Julkaisussa Bioinformatics (2019)

Fast detection of differential chromatin domains with SCIDDO

Tekijä Ebert, Peter, Schulz, Marcel H
Julkaisussa Bioinformatics (2020)

Informed kmer selection for de novo transcriptome assembly

Tekijä Durai, Dilip A., Schulz, Marcel H.
Julkaisussa Bioinformatics (2016)

In silico read normalization using set multi-cover optimization

Tekijä Durai, Dilip A, Schulz, Marcel H
Julkaisussa Bioinformatics (2018)

Improving in-silico normalization using read weights

Tekijä Durai, Dilip A., Schulz, Marcel H.
Julkaisussa Sci Rep (2019)

Automated analysis of small RNA datasets with RAPID

Tekijä Karunanithi, Sivarajan, Simon, Martin, Schulz, Marcel H.
Julkaisussa PeerJ (2019)

Integrative prediction of gene expression with chromatin accessibility and conformation data

Tekijä Schmidt, Florian, Kern, Fabian, Schulz, Marcel H.
Julkaisussa Epigenetics Chromatin (2020)

Improved linking of motifs to their TFs using domain information

Tekijä Baumgarten, Nina, Schmidt, Florian, Schulz, Marcel H
Julkaisussa Bioinformatics (2020)

Predicting transcription factor binding using ensemble random forest models

Tekijä Behjati Ardakani, Fatemeh, Schmidt, Florian, Schulz, Marcel H.
Julkaisussa F1000Res (2019)

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts

Tekijä Göke, Jonathan, Schulz, Marcel H., Lasserre, Julia, Vingron, Martin
Julkaistu 2012

JAMI: fast computation of conditional mutual information for ceRNA network analysis

Tekijä Hornakova, Andrea, List, Markus, Vreeken, Jilles, Schulz, Marcel H
Julkaisussa Bioinformatics (2018)

Exact score distribution computation for ontological similarity searches

Tekijä Schulz, Marcel H, Köhler, Sebastian, Bauer, Sebastian, Robinson, Peter N
Julkaistu 2011

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

Tekijä Schulz, Marcel H., Zerbino, Daniel R., Vingron, Martin, Birney, Ewan
Julkaistu 2012

Bayesian ontology querying for accurate and noise-tolerant semantic searches

Tekijä Bauer, Sebastian, Köhler, Sebastian, Schulz, Marcel H., Robinson, Peter N.
Julkaistu 2012

Large-scale inference of competing endogenous RNA networks with sparse partial correlation

Tekijä List, Markus, Dehghani Amirabad, Azim, Kostka, Dennis, Schulz, Marcel H
Julkaisussa Bioinformatics (2019)

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

Tekijä Ye, Kai, Schulz, Marcel H., Long, Quan, Apweiler, Rolf, Ning, Zemin
Julkaistu 2009

A general concept for consistent documentation of computational analyses

Tekijä Ebert, Peter, Müller, Fabian, Nordström, Karl, Lengauer, Thomas, Schulz, Marcel H.
Julkaisussa Database (Oxford) (2015)

TEPIC 2—an extended framework for transcription factor binding prediction and integrative epigenomic analysis

Tekijä Schmidt, Florian, Kern, Fabian, Ebert, Peter, Baumgarten, Nina, Schulz, Marcel H
Julkaisussa Bioinformatics (2019)

CpG content-dependent associations between transcription factors and histone modifications

Tekijä Fischer, Jonas, Ardakani, Fatemeh Behjati, Kattler, Kathrin, Walter, Jörn, Schulz, Marcel H.
Julkaisussa PLoS One (2021)