Letting the data speak for themselves: a fully Bayesian approach to transcriptome assembly

Por Schulz, Marcel H
Publicado no Genome Biol (2014)

Informed kmer selection for de novo transcriptome assembly

Por Durai, Dilip A., Schulz, Marcel H.
Publicado no Bioinformatics (2016)

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts

Por Göke, Jonathan, Schulz, Marcel H., Lasserre, Julia, Vingron, Martin
Publicado em 2012

Exact score distribution computation for ontological similarity searches

Por Schulz, Marcel H, Köhler, Sebastian, Bauer, Sebastian, Robinson, Peter N
Publicado em 2011

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

Por Schulz, Marcel H., Zerbino, Daniel R., Vingron, Martin, Birney, Ewan
Publicado em 2012

Bayesian ontology querying for accurate and noise-tolerant semantic searches

Por Bauer, Sebastian, Köhler, Sebastian, Schulz, Marcel H., Robinson, Peter N.
Publicado em 2012

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

Por Ye, Kai, Schulz, Marcel H., Long, Quan, Apweiler, Rolf, Ning, Zemin
Publicado em 2009

A general concept for consistent documentation of computational analyses

Por Ebert, Peter, Müller, Fabian, Nordström, Karl, Lengauer, Thomas, Schulz, Marcel H.
Publicado no Database (Oxford) (2015)

Epigenetic regulation of serotype expression antagonizes transcriptome dynamics in Paramecium tetraurelia

Por Cheaib, Miriam, Dehghani Amirabad, Azim, Nordström, Karl J. V., Schulz, Marcel H., Simon, Martin
Publicado no DNA Res (2015)

DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data

Por Schulz, Marcel H, Devanny, William E, Gitter, Anthony, Zhong, Shan, Ernst, Jason, Bar-Joseph, Ziv
Publicado em 2012

Fiona: a parallel and automatic strategy for read error correction

Por Schulz, Marcel H., Weese, David, Holtgrewe, Manuel, Dimitrova, Viktoria, Niu, Sijia, Reinert, Knut, Richard, Hugues
Publicado em 2014

Probabilistic error correction for RNA sequencing

Por Le, Hai-Son, Schulz, Marcel H., McCauley, Brenna M., Hinman, Veronica F., Bar-Joseph, Ziv
Publicado em 2013

De novo ChIP-seq analysis

Por He, Xin, Cicek, A. Ercument, Wang, Yuhao, Schulz, Marcel H., Le, Hai-Son, Bar-Joseph, Ziv
Publicado no Genome Biol (2015)

Reconstructing dynamic microRNA-regulated interaction networks

Por Schulz, Marcel H., Pandit, Kusum V., Lino Cardenas, Christian L., Ambalavanan, Namasivayam, Kaminski, Naftali, Bar-Joseph, Ziv
Publicado em 2013

Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions

Por Rödelsperger, Christian, Guo, Gao, Kolanczyk, Mateusz, Pletschacher, Angelika, Köhler, Sebastian, Bauer, Sebastian, Schulz, Marcel H., Robinson, Peter N.
Publicado em 2011

A tandem sequence motif acts as a distance-dependent enhancer in a set of genes involved in translation by binding the proteins NonO and SFPQ

Por Roepcke, Stefan, Stahlberg, Silke, Klein, Holger, Schulz, Marcel H, Theobald, Lars, Gohlke, Sabrina, Vingron, Martin, Walther, Diego J
Publicado em 2011

DECOD: fast and accurate discriminative DNA motif finding

Por Huggins, Peter, Zhong, Shan, Shiff, Idit, Beckerman, Rachel, Laptenko, Oleg, Prives, Carol, Schulz, Marcel H., Simon, Itamar, Bar-Joseph, Ziv
Publicado em 2011

Two sets of RNAi components are required for heterochromatin formation in trans triggered by truncated transgenes

Por Götz, Ulrike, Marker, Simone, Cheaib, Miriam, Andresen, Karsten, Shrestha, Simon, Durai, Dilip A., Nordström, Karl J., Schulz, Marcel H., Simon, Martin
Publicado no Nucleic Acids Res (2016)

Clinical Diagnostics in Human Genetics with Semantic Similarity Searches in Ontologies

Por Köhler, Sebastian, Schulz, Marcel H., Krawitz, Peter, Bauer, Sebastian, Dölken, Sandra, Ott, Claus E., Mundlos, Christine, Horn, Denise, Mundlos, Stefan, Robinson, Peter N.
Publicado em 2009

Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments

Por Richard, Hugues, Schulz, Marcel H., Sultan, Marc, Nürnberger, Asja, Schrinner, Sabine, Balzereit, Daniela, Dagand, Emilie, Rasche, Axel, Lehrach, Hans, Vingron, Martin, Haas, Stefan A., Yaspo, Marie-Laure
Publicado em 2010