taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

Por Corvelo, André, Clarke, Wayne E., Robine, Nicolas, Zody, Michael C.
Publicado no Genome Res (2018)

V-Phaser 2: variant inference for viral populations

Por Yang, Xiao, Charlebois, Patrick, Macalalad, Alex, Henn, Matthew R, Zody, Michael C
Publicado em 2013

Identifying novel constrained elements by exploiting biased substitution patterns

Por Garber, Manuel, Guttman, Mitchell, Clamp, Michele, Zody, Michael C., Friedman, Nir, Xie, Xiaohui
Publicado em 2009

Structural haplotypes and recent evolution of the human 17q21.31 region

Por Boettger, Linda M., Handsaker, Robert E., Zody, Michael C., McCarroll, Steven A.
Publicado em 2012

Conpair: concordance and contamination estimator for matched tumor–normal pairs

Por Bergmann, Ewa A., Chen, Bo-Juen, Arora, Kanika, Vacic, Vladimir, Zody, Michael C.
Publicado no Bioinformatics (2016)

Why do human diversity levels vary at a megabase scale?

Por Hellmann, Ines, Prüfer, Kay, Ji, Hongkai, Zody, Michael C., Pääbo, Svante, Ptak, Susan E.
Publicado em 2005

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing

Por Liu, Chang, Yang, Xiao, Duffy, Brian, Mohanakumar, Thalachallour, Mitra, Robi D., Zody, Michael C., Pfeifer, John D.
Publicado em 2013

Closing gaps in the human genome using sequencing by synthesis

Por Garber, Manuel, Zody, Michael C, Arachchi, Harindra M, Berlin, Aaron, Gnerre, Sante, Green, Lisa M, Lennon, Niall, Nusbaum, Chad
Publicado em 2009

Correction: Closing gaps in the human genome using sequencing by synthesis

Por Garber, Manuel, Zody, Michael C, Arachchi, Harindra C, Berlin, Aaron, Gnerre, Sante, Green, Lisa M, Lennon, Niall, Nusbaum, Chad
Publicado em 2011

Deep sequencing of RSV from an adult challenge study and from naturally infected infants reveals heterogeneous diversification dynamics

Por Lau, Jessica W., Kim, Young-In, Murphy, Ryan, Newman, Ruchi, Yang, Xiao, Zody, Michael, DeVincenzo, John, Grad, Yonatan H.
Publicado no Virology (2017)

Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2

Por Jaffe, David B., Butler, Jonathan, Gnerre, Sante, Mauceli, Evan, Lindblad-Toh, Kerstin, Mesirov, Jill P., Zody, Michael C., Lander, Eric S.
Publicado em 2003

Within-Host Whole-Genome Deep Sequencing and Diversity Analysis of Human Respiratory Syncytial Virus Infection Reveals Dynamics of Genomic Diversity in the Absence and Presence of...

Por Grad, Yonatan H., Newman, Ruchi, Zody, Michael, Yang, Xiao, Murphy, Ryan, Qu, James, Malboeuf, Christine M., Levin, Joshua Z., Lipsitch, Marc, DeVincenzo, John
Publicado em 2014

De novo assembly of highly diverse viral populations

Por Yang, Xiao, Charlebois, Patrick, Gnerre, Sante, Coole, Matthew G, Lennon, Niall J, Levin, Joshua Z, Qu, James, Ryan, Elizabeth M, Zody, Michael C, Henn, Matthew R
Publicado em 2012

Novel origins of copy number variation in the dog genome

Por Berglund, Jonas, Nevalainen, Elisa M, Molin, Anna-Maja, Perloski, Michele, André, Catherine, Zody, Michael C, Sharpe, Ted, Hitte, Christophe, Lindblad-Toh, Kerstin, Lohi, Hannes, Webster, Matthew T
Publicado em 2012

Exploiting Nucleotide Composition to Engineer Promoters

Por Grabherr, Manfred G., Pontiller, Jens, Mauceli, Evan, Ernst, Wolfgang, Baumann, Martina, Biagi, Tara, Swofford, Ross, Russell, Pamela, Zody, Michael C., Di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Reingard M.
Publicado em 2011

Dynamics of Dengue Disease Severity Determined by the Interplay Between Viral Genetics and Serotype-Specific Immunity

Por OhAinle, Molly, Balmaseda, Angel, Macalalad, Alexander R., Tellez, Yolanda, Zody, Michael C., Saborío, Saira, Nuñez, Andrea, Lennon, Niall J., Birren, Bruce W., Gordon, Aubree, Henn, Matthew R., Harris, Eva
Publicado no Sci Transl Med (2011)

Genomic patterns of de novo mutation in simplex autism

Por Turner, Tychele N., Coe, Bradley P., Dickel, Diane E., Hoekzema, Kendra, Nelson, Bradley J., Zody, Michael C., Kronenberg, Zev N., Hormozdiari, Fereydoun, Raja, Archana, Pennacchio, Len A., Darnell, Robert B., Eichler, Evan E.
Publicado no Cell (2017)

Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment

Por Di Giallonardo, Francesca, Geoghegan, Jemma L., Docherty, Douglas E., McLean, Robert G., Zody, Michael C., Qu, James, Yang, Xiao, Birren, Bruce W., Malboeuf, Christine M., Newman, Ruchi M., Ip, Hon S., Holmes, Edward C.
Publicado no J Virol (2015)

Whole Genome Pyrosequencing of Rare Hepatitis C Virus Genotypes Enhances Subtype Classification and Identification of Naturally Occurring Drug Resistance Variants

Por Newman, Ruchi M., Kuntzen, Thomas, Weiner, Brian, Berical, Andrew, Charlebois, Patrick, Kuiken, Carla, Murphy, Donald G., Simmonds, Peter, Bennett, Phil, Lennon, Niall J., Birren, Bruce W., Zody, Michael C., Allen, Todd M., Henn, Matthew R.
Publicado em 2013

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification

Por Malboeuf, Christine M., Yang, Xiao, Charlebois, Patrick, Qu, James, Berlin, Aaron M., Casali, Monica, Pesko, Kendra N., Boutwell, Christian L., DeVincenzo, John P., Ebel, Gregory D., Allen, Todd M., Zody, Michael C., Henn, Matthew R., Levin, Joshua Z.
Publicado em 2013