The Centromeric Retrotransposons of Rice Are Transcribed and Differentially Processed by RNA Interference

Por Neumann, Pavel, Yan, Huihuang, Jiang, Jiming
Publicado em 2007

An analytical workflow for accurate variant discovery in highly divergent regions

Por Tian, Shulan, Yan, Huihuang, Neuhauser, Claudia, Slager, Susan L.
Publicado no BMC Genomics (2016)

Impact of post-alignment processing in variant discovery from whole exome data

Por Tian, Shulan, Yan, Huihuang, Kalmbach, Michael, Slager, Susan L.
Publicado no BMC Bioinformatics (2016)

Genome-Wide Epigenetic Studies in Human Disease: A Primer on -Omic Technologies

Por Yan, Huihuang, Tian, Shulan, Slager, Susan L., Sun, Zhifu, Ordog, Tamas
Publicado no Am J Epidemiol (2016)

DRES-13. RETINOBLASTOMA BINDING PROTEIN 4 (RBBP4) INTERACTS WITH p300 TO REGULATE DNA REPAIR AND APOPTOSIS GENES IN GLIOBLASTOMA

Por Kitange, Gaspar, Mladek, Ann, Carlson, Brett, Bakken, Katrina, Yan, Huihuang, Sarkaria, Jann
Publicado no Neuro Oncol (2017)

Comparative analysis of de novo assemblers for variation discovery in personal genomes

Por Tian, Shulan, Yan, Huihuang, Klee, Eric W, Kalmbach, Michael, Slager, Susan L
Publicado no Brief Bioinform (2017)

Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species

Por Lee, Hye-Ran, Zhang, Wenli, Langdon, Tim, Jin, Weiwei, Yan, Huihuang, Cheng, Zhukuan, Jiang, Jiming
Publicado em 2005

Euchromatic Subdomains in Rice Centromeres Are Associated with Genes and Transcription([W])

Por Wu, Yufeng, Kikuchi, Shinji, Yan, Huihuang, Zhang, Wenli, Rosenbaum, Heidi, Iniguez, A. Leonardo, Jiang, Jiming
Publicado em 2011

CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data

Por Sun, Zhifu, Evans, Jared, Bhagwate, Aditya, Middha, Sumit, Bockol, Matthew, Yan, Huihuang, Kocher, Jean-Pierre
Publicado em 2014

Intergenic Locations of Rice Centromeric Chromatin

Por Yan, Huihuang, Talbert, Paul B, Lee, Hye-Ran, Jett, Jamie, Henikoff, Steven, Chen, Feng, Jiang, Jiming
Publicado em 2008

Epigenetic Alterations Are Associated With Gastric Emptying Disturbances in Diabetes Mellitus

Por Puthanmadhom Narayanan, Susrutha, Lee, Jeong-Heon, Bhagwate, Aditya, Kuwelker, Saatchi, Yan, Huihuang, Ordog, Tamas, Bharucha, Adil E.
Publicado no Clin Transl Gastroenterol (2020)

Transcription and Histone Modifications in the Recombination-Free Region Spanning a Rice Centromere

Por Yan, Huihuang, Jin, Weiwei, Nagaki, Kiyotaka, Tian, Shulan, Ouyang, Shu, Buell, C. Robin, Talbert, Paul B., Henikoff, Steven, Jiang, Jiming
Publicado em 2005

Genome-scale Analysis of Escherichia coli FNR Reveals Complex Features of Transcription Factor Binding

Por Myers, Kevin S., Yan, Huihuang, Ong, Irene M., Chung, Dongjun, Liang, Kun, Tran, Frances, Keleş, Sündüz, Landick, Robert, Kiley, Patricia J.
Publicado em 2013

Identification of factors associated with duplicate rate in ChIP-seq data

Por Tian, Shulan, Peng, Shuxia, Kalmbach, Michael, Gaonkar, Krutika S., Bhagwate, Aditya, Ding, Wei, Eckel-Passow, Jeanette, Yan, Huihuang, Slager, Susan L.
Publicado no PLoS One (2019)

TGFβ-induced fibroblast activation requires persistent and targeted HDAC-mediated gene repression

Por Jones, Dakota L., Haak, Andrew J., Caporarello, Nunzia, Choi, Kyoung M., Ye, Zhenqing, Yan, Huihuang, Varelas, Xaralabos, Ordog, Tamas, Ligresti, Giovanni, Tschumperlin, Daniel J.
Publicado no J Cell Sci (2019)

HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data

Por Yan, Huihuang, Evans, Jared, Kalmbach, Mike, Moore, Raymond, Middha, Sumit, Luban, Stanislav, Wang, Liguo, Bhagwate, Aditya, Li, Ying, Sun, Zhifu, Chen, Xianfeng, Kocher, Jean-Pierre A
Publicado em 2014

Enhanced and controlled chromatin extraction from FFPE tissues and the application to ChIP-seq

Por Zhong, Jian, Ye, Zhenqing, Clark, Chad R., Lenz, Samuel W., Nguyen, Justin H., Yan, Huihuang, Robertson, Keith D., Farrugia, Gianrico, Zhang, Zhiguo, Ordog, Tamas, Lee, Jeong-Heon
Publicado no BMC Genomics (2019)

Retinoblastoma Binding Protein 4 Modulates Temozolomide Sensitivity in Glioblastoma by Regulating DNA Repair Proteins

Por Kitange, Gaspar J., Mladek, Ann C., Schroeder, Mark A., Pokorny, Jenny C., Carlson, Brett L., Zhang, Yuji, Nair, Asha A., Lee, Jeong-Heon, Yan, Huihuang, Decker, Paul A., Zhang, Zhiguo, Sarkaria, Jann N.
Publicado no Cell Rep (2016)

Genomic and Genetic Characterization of Rice Cen3 Reveals Extensive Transcription and Evolutionary Implications of a Complex Centromere

Por Yan, Huihuang, Ito, Hidetaka, Nobuta, Kan, Ouyang, Shu, Jin, Weiwei, Tian, Shulan, Lu, Cheng, Venu, R.C., Wang, Guo-liang, Green, Pamela J., Wing, Rod A., Buell, C. Robin, Meyers, Blake C., Jiang, Jiming
Publicado em 2006

MACE: model based analysis of ChIP-exo

Por Wang, Liguo, Chen, Junsheng, Wang, Chen, Uusküla-Reimand, Liis, Chen, Kaifu, Medina-Rivera, Alejandra, Young, Edwin J., Zimmermann, Michael T., Yan, Huihuang, Sun, Zhifu, Zhang, Yuji, Wu, Stephen T., Huang, Haojie, Wilson, Michael D., Kocher, Jean-Pierre A., Li, Wei
Publicado no Nucleic Acids Res (2014)