CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data

Por Sun, Zhifu, Evans, Jared, Bhagwate, Aditya, Middha, Sumit, Bockol, Matthew, Yan, Huihuang, Kocher, Jean-Pierre
Publicado em 2014

BBBomics-Human Blood Brain Barrier Transcriptomics Hub

Por Kalari, Krishna R., Thompson, Kevin J., Nair, Asha A., Tang, Xiaojia, Bockol, Matthew A., Jhawar, Navya, Swaminathan, Suresh K., Lowe, Val J., Kandimalla, Karunya K.
Publicado no Front Neurosci (2016)

Recommendations for performance optimizations when using GATK3.8 and GATK4

Por Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Publicado no BMC Bioinformatics (2019)

Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4

Por Heldenbrand, Jacob R., Baheti, Saurabh, Bockol, Matthew A., Drucker, Travis M., Hart, Steven N., Hudson, Matthew E., Iyer, Ravishankar K., Kalmbach, Michael T., Kendig, Katherine I., Klee, Eric W., Mattson, Nathan R., Wieben, Eric D., Wiepert, Mathieu, Wildman, Derek E., Mainzer, Liudmila S.
Publicado no BMC Bioinformatics (2019)

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing

Por Kalari, Krishna R, Nair, Asha A, Bhavsar, Jaysheel D, O’Brien, Daniel R, Davila, Jaime I, Bockol, Matthew A, Nie, Jinfu, Tang, Xiaojia, Baheti, Saurabh, Doughty, Jay B, Middha, Sumit, Sicotte, Hugues, Thompson, Aubrey E, Asmann, Yan W, Kocher, Jean-Pierre A
Publicado no BMC Bioinformatics (2014)

Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy

Por Kendig, Katherine I., Baheti, Saurabh, Bockol, Matthew A., Drucker, Travis M., Hart, Steven N., Heldenbrand, Jacob R., Hernaez, Mikel, Hudson, Matthew E., Kalmbach, Michael T., Klee, Eric W., Mattson, Nathan R., Ross, Christian A., Taschuk, Morgan, Wieben, Eric D., Wiepert, Mathieu, Wildman, Derek E., Mainzer, Liudmila S.
Publicado no Front Genet (2019)

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations

Por Druliner, Brooke R., Wang, Panwen, Bae, Taejeong, Baheti, Saurabh, Slettedahl, Seth, Mahoney, Douglas, Vasmatzis, Nikolaos, Xu, Hang, Kim, Minsoo, Bockol, Matthew, O’Brien, Daniel, Grill, Diane, Warner, Nathaniel, Munoz-Gomez, Miguel, Kossick, Kimberlee, Johnson, Ruth, Mouchli, Mohamad, Felmlee-Devine, Donna, Washechek-Aletto, Jill, Smyrk, Thomas, Oberg, Ann, Wang, Junwen, Chia, Nicholas, Abyzov, Alexej, Ahlquist, David, Boardman, Lisa A.
Publicado no Sci Rep (2018)