Structural basis of the disorder in the tandem zinc finger domain of the RNA-binding protein Tristetraprolin

Por Tavella, Davide, Deveau, Laura M., Whitfield, Troy W., Massi, Francesca
Publicado no J Chem Theory Comput (2016)

A Machine Learning Approach for the Prediction of Protein Surface Loop Flexibility

Por Hwang, Howook, Vreven, Thom, Whitfield, Troy W., Wiehe, Kevin, Weng, Zhiping
Publicado em 2011

A theoretical study of aqueous solvation of K(+) comparing ab initio, polarizable, and fixed-charge models

Por Whitfield, Troy W., Varma, Sameer, Harder, Edward, Lamoureux, Guillaume, Rempe, Susan B., Roux, Benoît
Publicado em 2007

A Combined Experimental and Theoretical Study of Ion Solvation in Liquid N-Methylacetamide

Por Yu, Haibo, Mazzanti, Christopher L., Whitfield, Troy W., Koeppe, Roger E., Andersen, Olaf S., Roux, Benoît
Publicado em 2010

Identification of functional modules that correlate with phenotypic difference: the influence of network topology

Por Hung, Jui-Hung, Whitfield, Troy W, Yang, Tun-Hsiang, Hu, Zhenjun, Weng, Zhiping, DeLisi, Charles
Publicado em 2010

Simulating Monovalent and Divalent Ions in Aqueous Solution Using a Drude Polarizable Force Field

Por Yu, Haibo, Whitfield, Troy W., Harder, Edward, Lamoureux, Guillaume, Vorobyov, Igor, Anisimov, Victor M., MacKerell, Alexander D., Roux, Benoît
Publicado em 2010

Elucidating the Interdependence of Drug Resistance from Combinations of Mutations

Por Ragland, Debra A., Whitfield, Troy W., Lee, Sook-Kyung, Swanstrom, Ronald, Zeldovich, Konstantin B., Kurt-Yilmaz, Nese, Schiffer, Celia A.
Publicado no J Chem Theory Comput (2017)

Functional analysis of transcription factor binding sites in human promoters

Por Whitfield, Troy W, Wang, Jie, Collins, Patrick J, Partridge, E Christopher, Aldred, Shelley Force, Trinklein, Nathan D, Myers, Richard M, Weng, Zhiping
Publicado em 2012

Chromatin Dynamics Regulate Mesenchymal Stem Cell Lineage Specification and Differentiation to Osteogenesis

Por Wu, Hai, Gordon, Jonathan A.R., Whitfield, Troy W., Tai, Phillip W.L., van Wijnen, Andre J., Stein, Janet L., Stein, Gary S., Lian, Jane B.
Publicado no Biochim Biophys Acta (2017)

Genome-wide co-occupancy of AML1-ETO and N-CoR defines the t(8;21) AML signature in leukemic cells

Por Trombly, Daniel J, Whitfield, Troy W, Padmanabhan, Srivatsan, Gordon, Jonathan AR, Lian, Jane B, van Wijnen, Andre J, Zaidi, Sayyed K, Stein, Janet L, Stein, Gary S
Publicado no BMC Genomics (2015)

Constrained Mutational Sampling of Amino Acids in HIV-1 Protease Evolution

Por Boucher, Jeffrey I, Whitfield, Troy W, Dauphin, Ann, Nachum, Gily, Hollins, Carl, Zeldovich, Konstantin B, Swanstrom, Ronald, Schiffer, Celia A, Luban, Jeremy, Bolon, Daniel N A
Publicado no Mol Biol Evol (2019)

Molecular determinants of epistasis in HIV-1 protease: Elucidating the interdependence of L89V and L90M mutations in resistance

Por Henes, Mina, Kosovrasti, Klajdi, Lockbaum, Gordon J., Leidner, Florian, Nachum, Gily S., Nalivaika, Ellen A., Bolon, Daniel N.A., Yilmaz, Nese Kurt, Schiffer, Celia A., Whitfield, Troy W.
Publicado no Biochemistry (2019)

Genomic occupancy of Runx2 with global expression profiling identifies a novel dimension to control of osteoblastogenesis

Por Wu, Hai, Whitfield, Troy W, Gordon, Jonathan A R, Dobson, Jason R, Tai, Phillip W L, van Wijnen, Andre J, Stein, Janet L, Stein, Gary S, Lian, Jane B
Publicado em 2014

Epigenetic landscape during osteoblastogenesis defines a differentiation-dependent Runx2 promoter region

Por Tai, Phillip W. L., Wu, Hai, Gordon, Jonathan A. R., Whitfield, Troy W., Barutcu, A. Rasim, van Wijnen, André J., Lian, Jane B., Stein, Gary S., Stein, Janet L.
Publicado em 2014

Genome-Wide Studies Reveal that H3K4me3 Modification in Bivalent Genes Is Dynamically Regulated during the Pluripotent Cell Cycle and Stabilized upon Differentiation

Por Grandy, Rodrigo A., Whitfield, Troy W., Wu, Hai, Fitzgerald, Mark P., VanOudenhove, Jennifer J., Zaidi, Sayyed K., Montecino, Martin A., Lian, Jane B., van Wijnen, André J., Stein, Janet L., Stein, Gary S.
Publicado no Mol Cell Biol (2016)

The bone-specific Runx2-P1 promoter displays conserved three-dimensional chromatin structure with the syntenic Supt3h promoter

Por Barutcu, A. Rasim, Tai, Phillip W. L., Wu, Hai, Gordon, Jonathan A. R., Whitfield, Troy W., Dobson, Jason R., Imbalzano, Anthony N., Lian, Jane B., van Wijnen, André J., Stein, Janet L., Stein, Gary S.
Publicado em 2014

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Por Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, XinYing, Whitfield, Troy W., Greven, Melissa C., Pierce, Brian G., Dong, Xianjun, Kundaje, Anshul, Cheng, Yong, Rando, Oliver J., Birney, Ewan, Myers, Richard M., Noble, William S., Snyder, Michael, Weng, Zhiping
Publicado em 2012