The correlation between histone modifications and gene expression

door Dong, Xianjun, Weng, Zhiping
Gepubliceerd in Epigenomics (2013)

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes

door Dong, Xianjun, Fredman, David, Lenhard, Boris
Gepubliceerd in 2009

Making enhancers from spare parts of the genome

door Fredman, David, Dong, Xianjun, Lenhard, Boris
Gepubliceerd in 2011

Review of multi-omics data resources and integrative analysis for human brain disorders

door Dong, Xianjun, Liu, Chunyu, Dozmorov, Mikhail
Gepubliceerd in Brief Funct Genomics (2021)

Translog, a web browser for studying the expression divergence of homologous genes

door Dong, Xianjun, Akalin, Altuna, Sharma, Yogita, Lenhard, Boris
Gepubliceerd in 2010

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons

door Dong, Xianjun, Navratilova, Pavla, Fredman, David, Drivenes, Øyvind, Becker, Thomas S., Lenhard, Boris
Gepubliceerd in 2010

Ammonia Sensing Behaviors of TiO(2)-PANI/PA6 Composite Nanofibers

door Wang, Qingqing, Dong, Xianjun, Pang, Zengyuan, Du, Yuanzhi, Xia, Xin, Wei, Qufu, Huang, Fenglin
Gepubliceerd in 2012

Understanding the effect of smoking and drinking behavior on Parkinson's disease risk: a Mendelian randomization study

door Domínguez-Baleón, Carmen, Ong, Jue-Sheng, Scherzer, Clemens R., Rentería, Miguel E., Dong, Xianjun
Gepubliceerd in Sci Rep (2021)

The Role of H3K4me3 in Transcriptional Regulation Is Altered in Huntington’s Disease

door Dong, Xianjun, Tsuji, Junko, Labadorf, Adam, Roussos, Panos, Chen, Jiang-Fan, Myers, Richard H., Akbarian, Schahram, Weng, Zhiping
Gepubliceerd in PLoS One (2015)

Transcriptional features of genomic regulatory blocks

door Akalin, Altuna, Fredman, David, Arner, Erik, Dong, Xianjun, Bryne, Jan Christian, Suzuki, Harukazu, Daub, Carsten O, Hayashizaki, Yoshihide, Lenhard, Boris
Gepubliceerd in 2009

Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

door Yildirim, Ozlem, Li, Ruowang, Hung, Jui-Hung, Chen, Poshen B., Dong, Xianjun, Ee, Ly-sha, Weng, Zhiping, Rando, Oliver J., Fazzio, Thomas G.
Gepubliceerd in 2011

High-resolution analysis of differential gene expression during skeletal muscle atrophy and programmed cell death

door Tsuji, Junko, Thomson, Travis, Chan, Elizabeth, Brown, Christine K., Oppenheimer, Julia, Bigelow, Carol, Dong, Xianjun, Theurkauf, William E., Weng, Zhiping, Schwartz, Lawrence M.
Gepubliceerd in Physiol Genomics (2020)

Modeling gene expression using chromatin features in various cellular contexts

door Dong, Xianjun, Greven, Melissa C, Kundaje, Anshul, Djebali, Sarah, Brown, James B, Cheng, Chao, Gingeras, Thomas R, Gerstein, Mark, Guigó, Roderic, Birney, Ewan, Weng, Zhiping
Gepubliceerd in 2012

An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes

door Li, Xin Zhiguo, Roy, Christian K., Dong, Xianjun, Bolcun-Filas, Ewelina, Wang, Jie, Han, Bo W., Xu, Jia, Moore, Melissa J., Schimenti, John C., Weng, Zhiping, Zamore, Phillip D.
Gepubliceerd in 2013

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium

door Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, Xin-Ying, Greven, Melissa C., Kim, Bong-Hyun, Moore, Jill, Pierce, Brian G., Dong, Xianjun, Virgil, Daniel, Birney, Ewan, Hung, Jui-Hung, Weng, Zhiping
Gepubliceerd in 2013

MicroRNAs Located in the Hox Gene Clusters Are Implicated in Huntington's Disease Pathogenesis

door Hoss, Andrew G., Kartha, Vinay K., Dong, Xianjun, Latourelle, Jeanne C., Dumitriu, Alexandra, Hadzi, Tiffany C., MacDonald, Marcy E., Gusella, James F., Akbarian, Schahram, Chen, Jiang-Fan, Weng, Zhiping, Myers, Richard H.
Gepubliceerd in 2014

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

door Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, XinYing, Whitfield, Troy W., Greven, Melissa C., Pierce, Brian G., Dong, Xianjun, Kundaje, Anshul, Cheng, Yong, Rando, Oliver J., Birney, Ewan, Myers, Richard M., Noble, William S., Snyder, Michael, Weng, Zhiping
Gepubliceerd in 2012

Two independent transcription initiation codes overlap on vertebrate core promoters

door Haberle, Vanja, Li, Nan, Hadzhiev, Yavor, Plessy, Charles, Previti, Christopher, Nepal, Chirag, Gehrig, Jochen, Dong, Xianjun, Akalin, Altuna, Suzuki, Ana Maria, van IJcken, Wilfred F.J., Armant, Olivier, Ferg, Marco, Strähle, Uwe, Carninci, Piero, Müller, Ferenc, Lenhard, Boris
Gepubliceerd in Nature (2014)

Epigenetic dysregulation of hairy and enhancer of split 4 (HES4) is associated with striatal degeneration in postmortem Huntington brains

door Bai, Guang, Cheung, Iris, Shulha, Hennady P., Coelho, Joana E., Li, Ping, Dong, Xianjun, Jakovcevski, Mira, Wang, Yumei, Grigorenko, Anastasia, Jiang, Yan, Hoss, Andrew, Patel, Krupal, Zheng, Ming, Rogaev, Evgeny, Myers, Richard H., Weng, Zhiping, Akbarian, Schahram, Chen, Jiang-Fan
Gepubliceerd in Hum Mol Genet (2015)

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

door Cheng, Chao, Alexander, Roger, Min, Renqiang, Leng, Jing, Yip, Kevin Y., Rozowsky, Joel, Yan, Koon-Kiu, Dong, Xianjun, Djebali, Sarah, Ruan, Yijun, Davis, Carrie A., Carninci, Piero, Lassman, Timo, Gingeras, Thomas R., Guigó, Roderic, Birney, Ewan, Weng, Zhiping, Snyder, Michael, Gerstein, Mark
Gepubliceerd in 2012