Tiling array data analysis: a multiscale approach using wavelets

Por Karpikov, Alexander, Rozowsky, Joel, Gerstein, Mark
Publicado em 2011

MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework

Por Harmanci, Arif, Rozowsky, Joel, Gerstein, Mark
Publicado no Genome Biol (2014)

Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification

Por Royce, Thomas E., Rozowsky, Joel S., Gerstein, Mark B.
Publicado em 2007

An approach to comparing tiling array and high throughput sequencing technologies for genomic transcript mapping

Por Sasidharan, Rajkumar, Agarwal, Ashish, Rozowsky, Joel, Gerstein, Mark
Publicado em 2009

An approach to compare genome tiling microarray and MPSS sequencing data for transcript mapping

Por Sasidharan, Rajkumar, Agarwal, Ashish, Rozowsky, Joel, Gerstein, Mark
Publicado em 2009

Structuring supplemental materials in support of reproducibility

Por Greenbaum, Dov, Rozowsky, Joel, Stodden, Victoria, Gerstein, Mark
Publicado no Genome Biol (2017)

Modeling ChIP Sequencing In Silico with Applications

Por Zhang, Zhengdong D., Rozowsky, Joel, Snyder, Michael, Chang, Joseph, Gerstein, Mark
Publicado em 2008

Decoding neuroproteomics: integrating the genome, translatome and functional anatomy

Por Kitchen, Robert R., Rozowsky, Joel S., Gerstein, Mark B., Nairn, Angus C.
Publicado no Nat Neurosci (2014)

OrthoClust: an orthology-based network framework for clustering data across multiple species

Por Yan, Koon-Kiu, Wang, Daifeng, Rozowsky, Joel, Zheng, Henry, Cheng, Chao, Gerstein, Mark
Publicado no Genome Biol (2014)

Tilescope: online analysis pipeline for high-density tiling microarray data

Por Zhang, Zhengdong D, Rozowsky, Joel, Lam, Hugo YK, Du, Jiang, Snyder, Michael, Gerstein, Mark
Publicado em 2007

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays

Por Seringhaus, Michael, Rozowsky, Joel, Royce, Thomas, Nagalakshmi, Ugrappa, Jee, Justin, Snyder, Michael, Gerstein, Mark
Publicado em 2008

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries

Por Habegger, Lukas, Sboner, Andrea, Gianoulis, Tara A., Rozowsky, Joel, Agarwal, Ashish, Snyder, Michael, Gerstein, Mark
Publicado em 2011

A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets

Por Cheng, Chao, Yan, Koon-Kiu, Yip, Kevin Y, Rozowsky, Joel, Alexander, Roger, Shou, Chong, Gerstein, Mark
Publicado em 2011

Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors

Por Wang, Daifeng, Yan, Koon-Kiu, Sisu, Cristina, Cheng, Chao, Rozowsky, Joel, Meyerson, William, Gerstein, Mark B.
Publicado no PLoS Comput Biol (2015)

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping

Por Royce, Thomas E., Rozowsky, Joel S., Bertone, Paul, Samanta, Manoj, Stolc, Viktor, Weissman, Sherman, Snyder, Michael, Gerstein, Mark
Publicado em 2005

Design optimization methods for genomic DNA tiling arrays

Por Bertone, Paul, Trifonov, Valery, Rozowsky, Joel S., Schubert, Falk, Emanuelsson, Olof, Karro, John, Kao, Ming-Yang, Snyder, Michael, Gerstein, Mark
Publicado em 2006

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

Por Lefrançois, Philippe, Euskirchen, Ghia M, Auerbach, Raymond K, Rozowsky, Joel, Gibson, Theodore, Yellman, Christopher M, Gerstein, Mark, Snyder, Michael
Publicado em 2009

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome

Por Wu, Jia Qian, Du, Jiang, Rozowsky, Joel, Zhang, Zhengdong, Urban, Alexander E, Euskirchen, Ghia, Weissman, Sherman, Gerstein, Mark, Snyder, Michael
Publicado em 2008

Mapping accessible chromatin regions using Sono-Seq

Por Auerbach, Raymond K., Euskirchen, Ghia, Rozowsky, Joel, Lamarre-Vincent, Nathan, Moqtaderi, Zarmik, Lefrançois, Philippe, Struhl, Kevin, Gerstein, Mark, Snyder, Michael
Publicado em 2009

PeakSeq: Systematic Scoring of ChIP-Seq Experiments Relative to Controls

Por Rozowsky, Joel, Euskirchen, Ghia, Auerbach, Raymond K., Zhang, Zhengdong D., Gibson, Theodore, Bjornson, Robert, Carriero, Nicholas, Snyder, Michael, Gerstein, Mark B.
Publicado em 2009