SubNet: a Java application for subnetwork extraction

Por Zhang, Quanwei, Zhang, Zhengdong D.
Publicado em 2013

Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model

Por Gerstein Mark B, Zhang Zhengdong D
Publicado em 2010-10-01

Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model

Por Zhang, Zhengdong D, Gerstein, Mark B
Publicado em 2010

SubNet: a Java application for subnetwork extraction

Por Lemetre, Christophe, Zhang, Quanwei, Zhang, Zhengdong D.
Publicado em 2013

Modeling ChIP Sequencing In Silico with Applications

Por Zhang, Zhengdong D., Rozowsky, Joel, Snyder, Michael, Chang, Joseph, Gerstein, Mark
Publicado em 2008

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

Por Zhang, Zhengdong D, Frankish, Adam, Hunt, Toby, Harrow, Jennifer, Gerstein, Mark
Publicado em 2010

Tilescope: online analysis pipeline for high-density tiling microarray data

Por Zhang, Zhengdong D, Rozowsky, Joel, Lam, Hugo YK, Du, Jiang, Snyder, Michael, Gerstein, Mark
Publicado em 2007

Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants

Por Du, Jiang, Bjornson, Robert D., Zhang, Zhengdong D., Kong, Yong, Snyder, Michael, Gerstein, Mark B.
Publicado em 2009

Integrated Post-GWAS Analysis Sheds New Light on the Disease Mechanisms of Schizophrenia

Por Lin, Jhih-Rong, Cai, Ying, Zhang, Quanwei, Zhang, Wen, Nogales-Cadenas, Rubén, Zhang, Zhengdong D.
Publicado no Genetics (2016)

Identification of genomic indels and structural variations using split reads

Por Zhang, Zhengdong D, Du, Jiang, Lam, Hugo, Abyzov, Alex, Urban, Alexander E, Snyder, Michael, Gerstein, Mark
Publicado em 2011

MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT mice

Por Nogales-Cadenas, Ruben, Cai, Ying, Lin, Jhih-Rong, Zhang, Quanwei, Zhang, Wen, Montagna, Cristina, Zhang, Zhengdong D.
Publicado no Breast Cancer Res (2016)

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

Por Zhang, Zhengdong D., Paccanaro, Alberto, Fu, Yutao, Weissman, Sherman, Weng, Zhiping, Chang, Joseph, Snyder, Michael, Gerstein, Mark B.
Publicado em 2007

Naked mole-rat has increased translational fidelity compared with the mouse, as well as a unique 28S ribosomal RNA cleavage

Por Azpurua, Jorge, Ke, Zhonghe, Chen, Iris X., Zhang, Quanwei, Ermolenko, Dmitri N., Zhang, Zhengdong D., Gorbunova, Vera, Seluanov, Andrei
Publicado em 2013

INK4 locus of the tumor-resistant rodent, the naked mole rat, expresses a functional p15/p16 hybrid isoform

Por Tian, Xiao, Azpurua, Jorge, Ke, Zhonghe, Augereau, Adeline, Zhang, Zhengdong D., Vijg, Jan, Gladyshev, Vadim N., Gorbunova, Vera, Seluanov, Andrei
Publicado no Proc Natl Acad Sci U S A (2015)

Transcriptomic dynamics of breast cancer progression in the MMTV-PyMT mouse model

Por Cai, Ying, Nogales-Cadenas, Ruben, Zhang, Quanwei, Lin, Jhih-Rong, Zhang, Wen, O’Brien, Kelly, Montagna, Cristina, Zhang, Zhengdong D.
Publicado no BMC Genomics (2017)

PeakSeq: Systematic Scoring of ChIP-Seq Experiments Relative to Controls

Por Rozowsky, Joel, Euskirchen, Ghia, Auerbach, Raymond K., Zhang, Zhengdong D., Gibson, Theodore, Bjornson, Robert, Carriero, Nicholas, Snyder, Michael, Gerstein, Mark B.
Publicado em 2009

Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies

Por Euskirchen, Ghia M., Rozowsky, Joel S., Wei, Chia-Lin, Lee, Wah Heng, Zhang, Zhengdong D., Hartman, Stephen, Emanuelsson, Olof, Stolc, Viktor, Weissman, Sherman, Gerstein, Mark B., Ruan, Yijun, Snyder, Michael
Publicado em 2007

Comparative analysis of genome maintenance genes in naked mole rat, mouse, and human

Por MacRae, Sheila L, Zhang, Quanwei, Lemetre, Christophe, Seim, Inge, Calder, Robert B, Hoeijmakers, Jan, Suh, Yousin, Gladyshev, Vadim N, Seluanov, Andrei, Gorbunova, Vera, Vijg, Jan, Zhang, Zhengdong D
Publicado no Aging Cell (2015)

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

Por Trinklein, Nathan D., Karaöz, Ulaş, Wu, Jiaqian, Halees, Anason, Force Aldred, Shelley, Collins, Patrick J., Zheng, Deyou, Zhang, Zhengdong D., Gerstein, Mark B., Snyder, Michael, Myers, Richard M., Weng, Zhiping
Publicado em 2007

DNA repair in species with extreme lifespan differences

Por MacRae, Sheila L., Croken, Matthew McKnight, Calder, R.B., Aliper, Alexander, Milholland, Brandon, White, Ryan R., Zhavoronkov, Alexander, Gladyshev, Vadim N., Seluanov, Andrei, Gorbunova, Vera, Zhang, Zhengdong D., Vijg, Jan
Publicado no Aging (Albany NY) (2015)