Tilescope: online analysis pipeline for high-density tiling microarray data

Por Zhang, Zhengdong D, Rozowsky, Joel, Lam, Hugo YK, Du, Jiang, Snyder, Michael, Gerstein, Mark
Publicado em 2007

Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences

Por Lam, Hugo Y.K., Marenco, Luis, Shepherd, Gordon M., Miller, Perry L., Cheung, Kei-Hoi
Publicado em 2006

Segmental duplications in the human genome reveal details of pseudogene formation

Por Khurana, Ekta, Lam, Hugo Y. K., Cheng, Chao, Carriero, Nicholas, Cayting, Philip, Gerstein, Mark B.
Publicado em 2010

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project

Por Mu, Xinmeng Jasmine, Lu, Zhi John, Kong, Yong, Lam, Hugo Y. K., Gerstein, Mark B.
Publicado em 2011

Identification of genomic indels and structural variations using split reads

Por Zhang, Zhengdong D, Du, Jiang, Lam, Hugo, Abyzov, Alex, Urban, Alexander E, Snyder, Michael, Gerstein, Mark
Publicado em 2011

Pseudofam: the pseudogene families database

Por Lam, Hugo Y. K., Khurana, Ekta, Fang, Gang, Cayting, Philip, Carriero, Nicholas, Cheung, Kei-Hoi, Gerstein, Mark B.
Publicado em 2009

Measuring the Evolutionary Rewiring of Biological Networks

Por Shou, Chong, Bhardwaj, Nitin, Lam, Hugo Y. K., Yan, Koon-Kiu, Kim, Philip M., Snyder, Michael, Gerstein, Mark B.
Publicado em 2011

LongISLND: in silico sequencing of lengthy and noisy datatypes

Por Lau, Bayo, Mohiyuddin, Marghoob, Mu, John C., Fang, Li Tai, Bani Asadi, Narges, Dallett, Carolina, Lam, Hugo Y. K.
Publicado no Bioinformatics (2016)

MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains

Por Tonikian Raffi, Mok Janine, Kim Philip M, Lam Hugo YK, Sidhu Sachdev S, Turk Benjamin E, Snyder Michael, Gerstein Mark B
Publicado em 2010-05-01

MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains

Por Lam, Hugo YK, Kim, Philip M, Mok, Janine, Tonikian, Raffi, Sidhu, Sachdev S, Turk, Benjamin E, Snyder, Michael, Gerstein, Mark B
Publicado em 2010

Performance comparison of exome DNA sequencing technologies

Por Clark, Michael J, Chen, Rui, Lam, Hugo Y K, Karczewski, Konrad J, Chen, Rong, Euskirchen, Ghia, Butte, Atul J, Snyder, Michael
Publicado em 2011

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications

Por Mu, John C., Mohiyuddin, Marghoob, Li, Jian, Bani Asadi, Narges, Gerstein, Mark B., Abyzov, Alexej, Wong, Wing H., Lam, Hugo Y.K.
Publicado no Bioinformatics (2015)

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing

Por Mohiyuddin, Marghoob, Mu, John C., Li, Jian, Bani Asadi, Narges, Gerstein, Mark B., Abyzov, Alexej, Wong, Wing H., Lam, Hugo Y.K.
Publicado no Bioinformatics (2015)

Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods

Por Mu, John C., Tootoonchi Afshar, Pegah, Mohiyuddin, Marghoob, Chen, Xi, Li, Jian, Bani Asadi, Narges, Gerstein, Mark B., Wong, Wing H., Lam, Hugo Y. K.
Publicado no Sci Rep (2015)

svclassify: a method to establish benchmark structural variant calls

Por Parikh, Hemang, Mohiyuddin, Marghoob, Lam, Hugo Y. K., Iyer, Hariharan, Chen, Desu, Pratt, Mark, Bartha, Gabor, Spies, Noah, Losert, Wolfgang, Zook, Justin M., Salit, Marc
Publicado no BMC Genomics (2016)

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

Por Kim, Philip M., Lam, Hugo Y.K., Urban, Alexander E., Korbel, Jan O., Affourtit, Jason, Grubert, Fabian, Chen, Xueying, Weissman, Sherman, Snyder, Michael, Gerstein, Mark B.
Publicado em 2008

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library

Por Lam, Hugo Y. K., Mu, Xinmeng Jasmine, Stütz, Adrian M., Tanzer, Andrea, Cayting, Philip D., Snyder, Michael, Kim, Philip M., Korbel, Jan O., Gerstein, Mark B.
Publicado em 2009

Detecting and annotating genetic variations using the HugeSeq pipeline

Por Lam, Hugo Y K, Pan, Cuiping, Clark, Michael J, Lacroute, Phil, Chen, Rui, Haraksingh, Rajini, O’Huallachain, Maeve, Gerstein, Mark B, Kidd, Jeffrey M, Bustamante, Carlos D, Snyder, Michael
Publicado no Nat Biotechnol (2012)

AlzPharm: integration of neurodegeneration data using RDF

Por Lam, Hugo YK, Marenco, Luis, Clark, Tim, Gao, Yong, Kinoshita, June, Shepherd, Gordon, Miller, Perry, Wu, Elizabeth, Wong, Gwendolyn T, Liu, Nian, Crasto, Chiquito, Morse, Thomas, Stephens, Susie, Cheung, Kei-Hoi
Publicado em 2007

Performance comparison of whole-genome sequencing platforms

Por Lam, Hugo Y K, Clark, Michael J, Chen, Rui, Chen, Rong, Natsoulis, Georges, O’Huallachain, Maeve, Dewey, Frederick E, Habegger, Lukas, Ashley, Euan A, Gerstein, Mark B, Butte, Atul J, Ji, Hanlee P, Snyder, Michael
Publicado em 2011