Implications of chimeric non-collinear transcripts

Por Gingeras, Thomas R.
Publicado em 2009

Rampage: Promoter Activity Profiling by Paired-end Sequencing of 5′-complete cDNAs

Por Batut, Philippe, Gingeras, Thomas R.
Publicado no Curr Protoc Mol Biol (2013)

Mapping RNA-seq Reads with STAR

Por Dobin, Alexander, Gingeras, Thomas R.
Publicado no Curr Protoc Bioinformatics (2015)

Conserved noncoding transcription and core promoter regulatory code in early Drosophila development

Por Batut, Philippe J, Gingeras, Thomas R
Publicado no eLife (2017)

An effort to make sense of antisense transcription in bacteria

Por Lasa, Iñigo, Toledo-Arana, Alejandro, Gingeras, Thomas R.
Publicado em 2012

Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches

Por Rosenow, Carsten, Saxena, Rini Mukherjee, Durst, Mark, Gingeras, Thomas R.
Publicado em 2001

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Por Batut, Philippe, Dobin, Alexander, Plessy, Charles, Carninci, Piero, Gingeras, Thomas R.
Publicado em 2013

Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments

Por Ghosh, Srinka, Hirsch, Heather A, Sekinger, Edward, Struhl, Kevin, Gingeras, Thomas R
Publicado em 2006

Extracellular vesicle-mediated transfer of processed and functional RNY5 RNA

Por Chakrabortty, Sudipto K., Prakash, Ashwin, Nechooshtan, Gal, Hearn, Stephen, Gingeras, Thomas R.
Publicado no RNA (2015)

Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation

Por Dong, Shoulian, Wang, Eugene, Hsie, Linda, Cao, Yanxiang, Chen, Xiaogiong, Gingeras, Thomas R.
Publicado em 2001

Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data

Por Salamon, Hugh, Kato-Maeda, Midori, Small, Peter M., Drenkow, Jorg, Gingeras, Thomas R.
Publicado em 2000

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements

Por Schlesinger, Felix, Smith, Andrew D., Gingeras, Thomas R., Hannon, Gregory J., Hodges, Emily
Publicado em 2013

Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation

Por Livyatan, Ilana, Harikumar, Arigela, Nissim-Rafinia, Malka, Duttagupta, Radharani, Gingeras, Thomas R., Meshorer, Eran
Publicado em 2013

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

Por Kapranov, Philipp, Drenkow, Jorg, Cheng, Jill, Long, Jeffrey, Helt, Gregg, Dike, Sujit, Gingeras, Thomas R.
Publicado em 2005

Differential analysis for high density tiling microarray data

Por Ghosh, Srinka, Hirsch, Heather A, Sekinger, Edward A, Kapranov, Philipp, Struhl, Kevin, Gingeras, Thomas R
Publicado em 2007

Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

Por Rada-Iglesias, Alvaro, Ameur, Adam, Kapranov, Philipp, Enroth, Stefan, Komorowski, Jan, Gingeras, Thomas R., Wadelius, Claes
Publicado em 2008

High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans

Por Ramani, Arun K, Nelson, Andrew C, Kapranov, Philipp, Bell, Ian, Gingeras, Thomas R, Fraser, Andrew G
Publicado em 2009

Genome-Wide Mapping Indicates That p73 and p63 Co-Occupy Target Sites and Have Similar DNA-Binding Profiles In Vivo

Por Yang, Annie, Zhu, Zhou, Kettenbach, Arminja, Kapranov, Philipp, McKeon, Frank, Gingeras, Thomas R., Struhl, Kevin
Publicado em 2010

Comparing Genomes within the Species Mycobacterium tuberculosis

Por Kato-Maeda, Midori, Rhee, Jeanne T., Gingeras, Thomas R., Salamon, Hugh, Drenkow, Jorg, Smittipat, Nat, Small, Peter M.
Publicado em 2001

Synthetic spike-in standards for RNA-seq experiments

Por Jiang, Lichun, Schlesinger, Felix, Davis, Carrie A., Zhang, Yu, Li, Renhua, Salit, Marc, Gingeras, Thomas R., Oliver, Brian
Publicado em 2011