Hidden Markov models from molecular dynamics simulations on DNA

Por Thayer, Kelly M., Beveridge, D. L.
Publicado em 2002

Energetic Landscape of MDM2-p53 Interactions by Computational Mutagenesis of the MDM2-p53 Interaction

Por Thayer, Kelly M., Beyer, George A.
Publicado no PLoS One (2016)

Ion motions in molecular dynamics simulations on DNA

Por Ponomarev, Sergei Y., Thayer, Kelly M., Beveridge, David L.
Publicado em 2004

Dependence of prevalence of contiguous pathways in proteins on structural complexity

Por Thayer, Kelly M., Galganov, Jesse C., Stein, Avram J.
Publicado no PLoS One (2017)

Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein

Por Lakhani, Bharat, Thayer, Kelly M., Hingorani, Manju M., Beveridge, David L.
Publicado no J Phys Chem B (2017)

Analyses of the effects of all ubiquitin point mutants on yeast growth rate

Por Roscoe, Benjamin P., Thayer, Kelly M., Zeldovich, Konstantin B., Fushman, David, Bolon, Daniel N. A.
Publicado em 2013

Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control

Por Leonard, Effendi, Ajikumar, Parayil Kumaran, Thayer, Kelly, Xiao, Wen-Hai, Mo, Jeffrey D., Tidor, Bruce, Stephanopoulos, Gregory, Prather, Kristala L. J.
Publicado em 2010

Diversity of T Cell Epitopes in Plasmodium falciparum Circumsporozoite Protein Likely Due to Protein-Protein Interactions

Por Aragam, Nagesh R., Thayer, Kelly M., Nge, Nabi, Hoffman, Irving, Martinson, Francis, Kamwendo, Debbie, Lin, Feng-Chang, Sutherland, Colin, Bailey, Jeffrey A., Juliano, Jonathan J.
Publicado em 2013

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucl...

Por Dixit, Surjit B., Beveridge, David L., Case, David A., Cheatham, Thomas E., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Sklenar, Heinz, Thayer, Kelly M., Varnai, Péter
Publicado em 2005

Molecular Basis for Drug Resistance in HIV-1 Protease

Por Ali, Akbar, Bandaranayake, Rajintha M., Cai, Yufeng, King, Nancy M., Kolli, Madhavi, Mittal, Seema, Murzycki, Jennifer F., Nalam, Madhavi N.L., Nalivaika, Ellen A., Özen, Ayşegül, Prabu-Jeyabalan, Moses M., Thayer, Kelly, Schiffer, Celia A.
Publicado em 2010

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(C(p)G) Steps

Por Beveridge, David L., Barreiro, Gabriela, Byun, K. Suzie, Case, David A., Cheatham, Thomas E., Dixit, Surjit B., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Seibert, Eleanore, Sklenar, Heinz, Stoll, Gautier, Thayer, Kelly M., Varnai, Péter, Young, Matthew A.
Publicado em 2004