Hidden Markov models from molecular dynamics simulations on DNA

por Thayer, Kelly M., Beveridge, D. L.
Publicado 2002

APPROXIMATE MOLECULAR ORBITAL THEORY.

por POPLE J A., BEVERIDGE D L.
Publicado C1970

Theoretical considerations on the "spine of hydration" in the minor groove of d(CGCGAATTCGCG).d(GCGCTTAAGCGC): Monte Carlo computer simulation.

por Subramanian, P S, Ravishanker, G, Beveridge, D L
Publicado 1988

Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates.

por Vijayakumar, S, Vishveshwara, S, Ravishanker, G, Beveridge, D L
Publicado 1993

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.

por Young, M A, Ravishanker, G, Beveridge, D L
Publicado 1997

Molecular dynamics of an in vacuo model of duplex d(CGCGAATTCGCG) in the B-form based on the amber 3.0 force field.

por Srinivasan, J, Withka, J M, Beveridge, D L
Publicado 1990

Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and λ-Repressor with Cognate DNA Sequences

por Dixit, Surjit B., Andrews, David Q., Beveridge, D. L.
Publicado 2005

Dynamical Allosterism in the Mechanism of Action of DNA Mismatch Repair Protein MutS

por Pieniazek, Susan N., Hingorani, Manju M., Beveridge, D.L.
Publicado 2011

Analysis of local helix bending in crystal structures of DNA oligonucleotides and DNA-protein complexes.

por Young, M A, Ravishanker, G, Beveridge, D L, Berman, H M
Publicado 1995

Molecular Dynamics of a DNA Holliday Junction: The Inverted Repeat Sequence d(CCGGTACCGG)(4)

por Wheatley, Elizabeth G., Pieniazek, Susan N., Mukerji, Ishita, Beveridge, D.L.
Publicado 2012

Domain communication in the dynamical structure of human immunodeficiency virus 1 protease.

por Harte, W E, Swaminathan, S, Mansuri, M M, Martin, J C, Rosenberg, I E, Beveridge, D L
Publicado 1990

Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the A-to-B Transition in DNA

por Knee, Kelly M., Dixit, Surjit B., Aitken, Colin Echeverría, Ponomarev, Sergei, Beveridge, D. L., Mukerji, Ishita
Publicado 2008

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.

por Berman, H M, Olson, W K, Beveridge, D L, Westbrook, J, Gelbin, A, Demeny, T, Hsieh, S H, Srinivasan, A R, Schneider, B
Publicado 1992