Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps

Molecular dynamics (MD) simulations including water and counterions on B-DNA oligomers containing all 136 unique tetranucleotide basepair steps are reported. The objective is to obtain the calculated dynamical structure for at least two copies of each case, use the results to examine issues with reg...

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Bibliografiske detaljer
Main Authors: Dixit, Surjit B., Beveridge, David L., Case, David A., Cheatham, Thomas E., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Sklenar, Heinz, Thayer, Kelly M., Varnai, Péter
Format: Artigo
Sprog:Inglês
Udgivet: Biophysical Society 2005
Fag:
Biophysical Theory and Modeling
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC1366942/
https://ncbi.nlm.nih.gov/pubmed/16169978
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1529/biophysj.105.067397
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