Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps

Molecular dynamics (MD) simulations including water and counterions on B-DNA oligomers containing all 136 unique tetranucleotide basepair steps are reported. The objective is to obtain the calculated dynamical structure for at least two copies of each case, use the results to examine issues with reg...

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Main Authors: Dixit, Surjit B., Beveridge, David L., Case, David A., Cheatham, Thomas E., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Sklenar, Heinz, Thayer, Kelly M., Varnai, Péter
Formato: Artigo
Idioma:Inglês
Publicado: Biophysical Society 2005
Assuntos:
Biophysical Theory and Modeling
Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC1366942/
https://ncbi.nlm.nih.gov/pubmed/16169978
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1529/biophysj.105.067397
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