Axis Curvature and Ligand Induced Bending in the CAP-DNA Oligomers

Por Dixit, Surjit B., Beveridge, David L.
Publicado em 2005

The ABCs of molecular dynamics simulations on B-DNA, circa 2012

Por Beveridge, David L, Cheatham, Thomas E, Mezei, Mihaly
Publicado em 2012

Ion motions in molecular dynamics simulations on DNA

Por Ponomarev, Sergei Y., Thayer, Kelly M., Beveridge, David L.
Publicado em 2004

A Study of Collective Atomic Fluctuations and Cooperativity in a U1A-RNA Complex Based on Molecular Dynamics Simulations

Por Kormos, Bethany L., Baranger, Anne M., Beveridge, David L.
Publicado em 2006

Do Collective Atomic Fluctuations Account for Cooperative Effects? Molecular Dynamics Studies of the U1A-RNA Complex

Por Kormos, Bethany L., Baranger, Anne M., Beveridge, David L.
Publicado em 2006

Prokaryotic Gene Finding Based on Physicochemical Characteristics of Codons Calculated from Molecular Dynamics Simulations

Por Singhal, Poonam, Jayaram, B., Dixit, Surjit B., Beveridge, David L.
Publicado em 2008

A Statistical Thermodynamic Model for Investigating the Stability of DNA Sequences from Oligonucleotides to Genomes

Por Khandelwal, Garima, Lee, Rebecca A., Jayaram, B., Beveridge, David L.
Publicado em 2014

Affinity and Specificity of Protein U1A-RNA Complex Formation Based on an Additive Component Free Energy Model

Por Kormos, Bethany L., Benitex, Yulia, Baranger, Anne M., Beveridge, David L.
Publicado em 2007

Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein

Por Lakhani, Bharat, Thayer, Kelly M., Hingorani, Manju M., Beveridge, David L.
Publicado no J Phys Chem B (2017)

U1A Protein – Stem Loop 2 RNA Recognition: Prediction of Structural Differences from Protein Mutations

Por Kormos, Bethany L., Pieniazek, Susan N., Beveridge, David L., Baranger, Anne M.
Publicado em 2011

Dynamics of Water and Ions near DNA: Comparison of Simulation to Time-Resolved Stokes-Shift Experiments

Por Sen, Sobhan, Andreatta, Daniele, Ponomarev, Sergei Y., Beveridge, David L., Berg, Mark A.
Publicado em 2009

Characterization of the Dynamics of an Essential Helix in the U1A Protein by Time-Resolved Fluorescence Measurements

Por Anunciado, Divina, Agumeh, Michael, Kormos, Bethany L., Beveridge, David L., Knee, Joseph L., Baranger, Anne M.
Publicado em 2008

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucl...

Por Dixit, Surjit B., Beveridge, David L., Case, David A., Cheatham, Thomas E., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Sklenar, Heinz, Thayer, Kelly M., Varnai, Péter
Publicado em 2005

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(C(p)G) Steps

Por Beveridge, David L., Barreiro, Gabriela, Byun, K. Suzie, Case, David A., Cheatham, Thomas E., Dixit, Surjit B., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Seibert, Eleanore, Sklenar, Heinz, Stoll, Gautier, Thayer, Kelly M., Varnai, Péter, Young, Matthew A.
Publicado em 2004