Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(C(p)G) Steps

We describe herein a computationally intensive project aimed at carrying out molecular dynamics (MD) simulations including water and counterions on B-DNA oligomers containing all 136 unique tetranucleotide base sequences. This initiative was undertaken by an international collaborative effort involv...

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Detalhes bibliográficos
Main Authors: Beveridge, David L., Barreiro, Gabriela, Byun, K. Suzie, Case, David A., Cheatham, Thomas E., Dixit, Surjit B., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Seibert, Eleanore, Sklenar, Heinz, Stoll, Gautier, Thayer, Kelly M., Varnai, Péter, Young, Matthew A.
Formato: Artigo
Idioma:Inglês
Publicado em: Biophysical Society 2004
Assuntos:
Biophysical Theory and Modeling
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC1304892/
https://ncbi.nlm.nih.gov/pubmed/15326025
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1529/biophysj.104.045252
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