Basal ganglia echogenicity in tauopathies

by Sadowski, Krzysztof, Serafin-Król, Małgorzata, Szlachta, Karol, Friedman, Andrzej
Published in J Neural Transm (Vienna) (2014)

CNCC: an analysis tool to determine genome-wide DNA break end structure at single-nucleotide resolution

by Szlachta, Karol, Raimer, Heather M., Comeau, Laurey D., Wang, Yuh-Hwa
Published in BMC Genomics (2020)

Brain tissue echogenicity—implications for substantia nigra studies in parkinsonian patients

by Sadowski, Krzysztof, Szlachta, Karol, Serafin-Król, Małgorzata, Gałązka-Friedman, Jolanta, Friedman, Andrzej
Published 2011

Crystal structure of equine serum albumin in complex with cetirizine reveals a novel drug-binding site

by Handing, Katarzyna B., Shabalin, Ivan G., Szlachta, Karol, Majorek, Karolina A., Minor, Wladek
Published in Mol Immunol (2016)

Genomic analysis of DNA repair genes and androgen signaling in prostate cancer

by Jividen, Kasey, Kedzierska, Katarzyna Z, Yang, Chun-Song, Szlachta, Karol, Ratan, Aakrosh, Paschal, Bryce M
Published in BMC Cancer (2018)

Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human

by Szlachta, Karol, Thys, Ryan G., Atkin, Naomi D., Pierce, Levi C. T., Bekiranov, Stefan, Wang, Yuh-Hwa
Published in Genome Biol (2018)

Pausing sites of RNA polymerase II on actively transcribed genes are enriched in DNA double-stranded breaks

by Singh, Sandeep, Szlachta, Karol, Manukyan, Arkadi, Raimer, Heather M., Dinda, Manikarna, Bekiranov, Stefan, Wang, Yuh-Hwa
Published in J Biol Chem (2020)

Topoisomerase II contributes to DNA secondary structure-mediated double-stranded breaks

by Szlachta, Karol, Manukyan, Arkadi, Raimer, Heather M, Singh, Sandeep, Salamon, Anita, Guo, Wenying, Lobachev, Kirill S, Wang, Yuh-Hwa
Published in Nucleic Acids Res (2020)

Complex DNA structures trigger copy number variation across the Plasmodium falciparum genome

by Huckaby, Adam C, Granum, Claire S, Carey, Maureen A, Szlachta, Karol, Al-Barghouthi, Basel, Wang, Yuh-Hwa, Guler, Jennifer L
Published in Nucleic Acids Res (2019)

Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9

by Qin, Peiwu, Parlak, Mahmut, Kuscu, Cem, Bandaria, Jigar, Mir, Mustafa, Szlachta, Karol, Singh, Ritambhara, Darzacq, Xavier, Yildiz, Ahmet, Adli, Mazhar
Published in Nat Commun (2017)

CRISPR knockout screening identifies combinatorial drug targets in pancreatic cancer and models cellular drug response

by Szlachta, Karol, Kuscu, Cem, Tufan, Turan, Adair, Sara J., Shang, Stephen, Michaels, Alex D., Mullen, Matthew G., Fischer, Natasha Lopes, Yang, Jiekun, Liu, Limin, Trivedi, Prasad, Stelow, Edward B., Stukenberg, P. Todd, Parsons, J. Thomas, Bauer, Todd W., Adli, Mazhar
Published in Nat Commun (2018)

SequencErr: measuring and suppressing sequencer errors in next-generation sequencing data

by Davis, Eric M., Sun, Yu, Liu, Yanling, Kolekar, Pandurang, Shao, Ying, Szlachta, Karol, Mulder, Heather L., Ren, Dongren, Rice, Stephen V., Wang, Zhaoming, Nakitandwe, Joy, Gout, Alexander M., Shaner, Bridget, Hall, Salina, Robison, Leslie L., Pounds, Stanley, Klco, Jeffery M., Easton, John, Ma, Xiaotu
Published in Genome Biol (2021)

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data

by Tian, Liqing, Li, Yongjin, Edmonson, Michael N., Zhou, Xin, Newman, Scott, McLeod, Clay, Thrasher, Andrew, Liu, Yu, Tang, Bo, Rusch, Michael C., Easton, John, Ma, Jing, Davis, Eric, Trull, Austyn, Michael, J. Robert, Szlachta, Karol, Mullighan, Charles, Baker, Suzanne J., Downing, James R., Ellison, David W., Zhang, Jinghui
Published in Genome Biol (2020)

Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X

by Liu, Yu, Li, Chunliang, Shen, Shuhong, Chen, Xiaolong, Szlachta, Karol, Edmonson, Michael N., Shao, Ying, Ma, Xiaotu, Hyle, Judith, Wright, Shaela, Ju, Bensheng, Rusch, Michael C., Liu, Yanling, Li, Benshang, Macias, Michael, Tian, Liqing, Easton, John, Qian, Maoxiang, Yang, Jun J., Hu, Shaoyan, Look, A. Thomas, Zhang, Jinghui
Published in Nat Genet (2020)

Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia

by Li, Benshang, Brady, Samuel W., Ma, Xiaotu, Shen, Shuhong, Zhang, Yingchi, Li, Yongjin, Szlachta, Karol, Dong, Li, Liu, Yu, Yang, Fan, Wang, Ningling, Flasch, Diane A., Myers, Matthew A., Mulder, Heather L., Ding, Lixia, Liu, Yanling, Tian, Liqing, Hagiwara, Kohei, Xu, Ke, Zhou, Xin, Sioson, Edgar, Wang, Tianyi, Yang, Liu, Zhao, Jie, Zhang, Hui, Shao, Ying, Sun, Hongye, Sun, Lele, Cai, Jiaoyang, Sun, Hui-Ying, Lin, Ting-Nien, Du, Lijuan, Li, Hui, Rusch, Michael, Edmonson, Michael N., Easton, John, Zhu, Xiaofan, Zhang, Jingliao, Cheng, Cheng, Raphael, Benjamin J., Tang, Jingyan, Downing, James R., Alexandrov, Ludmil B., Zhou, Bin-Bing S., Pui, Ching-Hon, Yang, Jun J., Zhang, Jinghui
Published in Blood (2020)